View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6307_low_4 (Length: 404)
Name: NF6307_low_4
Description: NF6307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6307_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 909040 - 908648
Alignment:
| Q |
1 |
atttaagagcaaccctttatataaatggacttcaagcaaacaaaatgtgttttactcttatatacgcgtctaaagtcagacatactcgccaattttgtgc |
100 |
Q |
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| T |
909040 |
atttaagagcaaccctttatataaatggacttcaagcaaacaaaatgtgttttactcttatatacgcgtctaaagtcagacatactcgccagttttgtgc |
908941 |
T |
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| Q |
101 |
ttatatttgggacatgattttggagggtaggggtgagtttattgacaaaatacataccaagtaaggagcttagattggactaaaaaatgagaaacaacca |
200 |
Q |
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| T |
908940 |
ttatatttgggacatgattttggagggtaggggtgagtttattggcaaaatacataccaagtaaggagcttagattggactaaaaaatgagaaacaacca |
908841 |
T |
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| Q |
201 |
ctataaattatgcagtttgaagtaatttggctaaacaaaaagagttaaatcgaagaattcatgcaaaattgtgcctgtaagttttaccataatcatcaga |
300 |
Q |
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| T |
908840 |
ctataaattatgcagtttgaagtaatttggctaaac--aaagagttaaatcgaagaattcatgcaaaattgtgcctgtaagttttaccataatcatcaga |
908743 |
T |
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| Q |
301 |
g---------agtaaactttttggagacatgaacaaagtggatcacttttatgttacatgaataatgtgatgacttaaaattaaatcagtgaata |
386 |
Q |
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| T |
908742 |
gagacaagttagtaaactttttggagacatgaacaaagtggatcacttttatgttacatgaataatgtgatgacttaaaattaaatcagtgaata |
908648 |
T |
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