View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6308_high_14 (Length: 222)
Name: NF6308_high_14
Description: NF6308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6308_high_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 52558273 - 52558494
Alignment:
| Q |
1 |
ttatatatttatcgtttcatttcatagtcatacatacataggaaaatccttgttttaattaattttgctacaaaaaagttcttgtatgatccatattgtt |
100 |
Q |
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| T |
52558273 |
ttatatatttatcgtttcatttcatagtcatacatacataggaaaatccttgttttaattaattttgctacaaaaaagttcttgtatgatccatattgtt |
52558372 |
T |
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| Q |
101 |
tttagatttgtcatgtttttgtttaaatgtgtggtacagaaggtcttgttagtacttatgtctgaattttgatgtttgctctctgggatatgatactgtt |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52558373 |
tttagatttgtcatgtttttgtataaatgtgtggtacagaaggtcttgttagtacttatgtctgaattttgatgtgtgctctctgggatatgatactgtt |
52558472 |
T |
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| Q |
201 |
gattaagatattttgatgttgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
52558473 |
gattaagatattttgatgttgt |
52558494 |
T |
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