View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6308_high_3 (Length: 418)
Name: NF6308_high_3
Description: NF6308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6308_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 52066275 - 52066081
Alignment:
| Q |
10 |
catcatcatgaagcacatgcaattatgtaaaattcttgtttggatatgaacactgttttaaaagctagattgaactggcggaacaagaaactagctggtt |
109 |
Q |
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| T |
52066275 |
catcatcatgaagcacatgcaattatgtaaaattcttgttcggatatgaacactgttttaaaagctagatcgaactggcggaacaagaaactagctggtt |
52066176 |
T |
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| Q |
110 |
tatcggttggtttaattctaattacattgtagtttgtttgaatcacattgaataggatgttgaacccgttcaaccatgcatggttggttcaacca |
204 |
Q |
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| T |
52066175 |
tatcggttggtttaattctaattacattgtagcttgtttgaatcacattgaataggatgttgaacccgttcaaccatgcatggttggttcaacca |
52066081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 254 - 408
Target Start/End: Complemental strand, 52066032 - 52065878
Alignment:
| Q |
254 |
gtcatctggttcaaccgtgattaaattgattaacccaattgaacaatgactcaaagtctcaccggtttgatttccaaccctatttttaaaacatagtctt |
353 |
Q |
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| T |
52066032 |
gtcatctggttcaaccgtgattaaattgattcacccaattgaacaatgactcaaagtctcaccggtttgatttccaaccctatttttaaaacatagtctt |
52065933 |
T |
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| Q |
354 |
aaaaaagtgaagtgtttacattaaaacttcatgaattcatgtgtaggtgatgatg |
408 |
Q |
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| T |
52065932 |
aaaaaagtgaagtgtttacattaaaacttcatgaattcatgtgtaggtggtgatg |
52065878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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