View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6308_high_4 (Length: 411)
Name: NF6308_high_4
Description: NF6308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6308_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 396
Target Start/End: Complemental strand, 4919210 - 4918823
Alignment:
| Q |
10 |
acatcatcacaagtgaattaaaaatggaaaatccaaataaaatctctactaactacttttgttcacgttccattgctttcggctttgattgatccatttt |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4919210 |
acatcaccacaagtgaattaaaaatggaaaatccaaataaaatctctactaactacttttgttcacgttccattgctttcggctttgattgatccatttt |
4919111 |
T |
|
| Q |
110 |
gttctttgccatttatttgtactcttgttcttattgctcgtgttcttcagtgttaacttgtgtttgaataactatgaattgaaccattcaaaagca-ttt |
208 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4919110 |
gttctttgccatttatttgtacttttgttcttattgctcgtgttcttcagtgttaacttgtgtttgaataactatgaattgaaccattcaaaagcatttt |
4919011 |
T |
|
| Q |
209 |
ctcatgttcttaattcttattaggtatacttgatataagagattgtttagggaatggttatcatgttctagctgctcaagttcttatcaggtttcatgtt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4919010 |
ctcatgttcttaattcttattaggtatacttgatataagagattgtttagagaatggctatcatgttctagctgctcatgttcttatcaggtttcatgtt |
4918911 |
T |
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| Q |
309 |
agtcattgatattcaaacatagaatgaaaccagggaaagaaatgagacgattcttaattaacttgaagattgaataacattgaaaact |
396 |
Q |
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||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4918910 |
agtcattgatattcaaacatagaatgaccccaggggaagatatgagacgattcttaattaacttgaagattgaataacattgaaaact |
4918823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 4918656 - 4918722
Alignment:
| Q |
10 |
acatcatcacaagtgaattaaaaatggaaaa-tccaaataaaatctctactaactacttttgttcac |
75 |
Q |
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|||||| ||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |
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| T |
4918656 |
acatcaacacaagtaaattaaaaatgaaaaaatccaaataaaatctctattaactacttttgttcac |
4918722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 9043399 - 9043270
Alignment:
| Q |
10 |
acatcatcacaagtgaattaaaaatggaaaatccaaa-taaaatctctactaactacttttgttcacgttccattgctttcggctttgattgatccattt |
108 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||| |
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| T |
9043399 |
acatcaacacaagtgaattataaatggaaaattcaaaataaaatctctactaactacttttgttcacattccattatttttggctttgattgatcgattt |
9043300 |
T |
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| Q |
109 |
tgttctttgccatttatttgtactcttgtt |
138 |
Q |
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|||||||||||||||| |||||||| |||| |
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| T |
9043299 |
tgttctttgccatttaattgtactcatgtt |
9043270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 170 - 295
Target Start/End: Complemental strand, 9043273 - 9043148
Alignment:
| Q |
170 |
tgtttgaataactatgaattgaaccattcaaaagcatttctcatgttcttaattcttattaggtatacttgatataagagattgtttagggaatggttat |
269 |
Q |
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|
||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| |
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| T |
9043273 |
tgtttgaataactgagaatgaaaccattcaaaaccatttctcatgttcttaattcttattaggtgtacttaatataagagattgtttagagaatggttat |
9043174 |
T |
|
| Q |
270 |
catgttctagctgctcaagttcttat |
295 |
Q |
| |
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||||||||| ||||| |||||||| |
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| T |
9043173 |
catgttctaattgctcgtgttcttat |
9043148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 5251388 - 5251452
Alignment:
| Q |
10 |
acatcatcacaagtgaattaaaaatggaaaatccaaataaaatctctactaactacttttgttcac |
75 |
Q |
| |
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|||||| |||||||||||||||| || ||||| ||||| ||||||||| |||| |||||||||||| |
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| T |
5251388 |
acatcaacacaagtgaattaaaa-tgaaaaatacaaatcaaatctctaataaccacttttgttcac |
5251452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 54111824 - 54111876
Alignment:
| Q |
10 |
acatcatcacaagtgaattaaaaatggaaaatccaaataaaatctctactaac |
62 |
Q |
| |
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|||||||||||| |||||||||| | ||||||||||| ||||||||| |||| |
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| T |
54111824 |
acatcatcacaaatgaattaaaatggaaaaatccaaatcaaatctctaataac |
54111876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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