View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6308_high_7 (Length: 286)
Name: NF6308_high_7
Description: NF6308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6308_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 29111481 - 29111236
Alignment:
| Q |
25 |
ccaataagaaatcatttgatgcaaaaaatttgatggactattccacatatatatcatcatgnnnnnnnnn--gttgaaggaaatatatatcatcatgcta |
122 |
Q |
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| T |
29111481 |
ccaataaaaaatcatttgatgcaataaatttgatggactattccacatatatatcatcatgtttttttttttgttgaaggaaatatatatcatcatgcta |
29111382 |
T |
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| Q |
123 |
tcaacacactttctcaacataaaatccctaattaattaaaatttatgtgttctaatgaaggtcattgtttaatgaatttataatagaacattttgtagta |
222 |
Q |
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| T |
29111381 |
tcaacacactttctcaacataaat--ccttattaattaaaatttatgtgttctaatgaaggtcattgtttaatgaatttataatagaacattttgtagta |
29111284 |
T |
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| Q |
223 |
aaaatataagtcaagttgttatcaaagtaataataattacattatatt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29111283 |
aaaatataagtcaagttgttatcaaagtaataataattacattatatt |
29111236 |
T |
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