View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6308_low_14 (Length: 242)
Name: NF6308_low_14
Description: NF6308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6308_low_14 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 12188351 - 12188107
Alignment:
| Q |
1 |
gatggaagccagcaacattgttagaaaaagtaaccccttggaattcattttcttataactcatcatgaaactattgtattgatcgatgaaaatgaagtgt |
100 |
Q |
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| T |
12188351 |
gatggaagccagcaacatagtaagaaaaagtaaccctttggaattcattttcttatagcttattgtgaaactattgtattgatcgatgaaaatgaagtgt |
12188252 |
T |
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| Q |
101 |
ctgaaagttatgtatttataggcaagatgaggaagaaatagtacaaaaaacattaaattccttcgttgacattaagat---ttataatttcattcttatt |
197 |
Q |
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| T |
12188251 |
ctgaaagttatgtatttataggtaacatgagaaagaaatagaacaaaaaacattaaattccttcgttgacataaagttatataataatttcattcttatt |
12188152 |
T |
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| Q |
198 |
tttcttctttatttgaccgtatagtgatcattctcgagtgactat |
242 |
Q |
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| T |
12188151 |
tttcttctttgtttgaccgtatagtgatcattctcgagtgactat |
12188107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 12182346 - 12182171
Alignment:
| Q |
1 |
gatggaagccagcaacattgttagaaaaagtaaccccttggaattcattttcttataactcatcatgaaactattgtattgatcgatgaaaatgaagtgt |
100 |
Q |
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| T |
12182346 |
gatggaagccagcaacatagtaagaaaaagtaaccctttggaattcattttgttatagcttatcgtgaaactattgtattgatcgatgaaaatgaagtgt |
12182247 |
T |
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| Q |
101 |
ctgaaagttatgtatttataggcaagatgaggaagaaatagtacaaaaaacattaaattccttcgttgacattaag |
176 |
Q |
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| T |
12182246 |
ctgaaagttatgtatttataggcaacatgagaaagaaatagaacaaaaaacattaaattccttcgttgacattaag |
12182171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 12175358 - 12175205
Alignment:
| Q |
22 |
tagaaaaagtaaccccttggaattcattttcttataactcatcatgaaactattgtat--tgatcgatgaaaatgaagtgtctgaaagttatgtatttat |
119 |
Q |
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| T |
12175358 |
tagaaaaagtaaccctttggaattcattttcttataacttactttgaaactattgtatattgatcgatgaaaatgaagtgactgaaagttatgtatttat |
12175259 |
T |
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| Q |
120 |
aggcaagatgaggaagaaatagtacaaaaaacattaaattccttcgttgacatt |
173 |
Q |
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| T |
12175258 |
aggcaagatgaggaagaaatagaacaaaaagcattaaattctttggttgacatt |
12175205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12149520 - 12149469
Alignment:
| Q |
1 |
gatggaagccagcaacattgttagaaaaagtaaccccttggaattcattttc |
52 |
Q |
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| T |
12149520 |
gatggaagccaacaacatggctagaaaaagtaacgccttggaattcattttc |
12149469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12146289 - 12146339
Alignment:
| Q |
1 |
gatggaagccagcaacattgttagaaaaagtaaccccttggaattcatttt |
51 |
Q |
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| T |
12146289 |
gatggaagccaacaacatagctagaaaaagtaaagccttggaattcatttt |
12146339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 12163912 - 12163847
Alignment:
| Q |
76 |
gtattgatcgatgaaaatgaagtgtctgaaagttatgtatttataggcaagatgaggaagaaatag |
141 |
Q |
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| T |
12163912 |
gtattgattgatgaaaatgaagtgaccaaatgttgggtatttataggcaaggtgaggcagaaatag |
12163847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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