View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6308_low_6 (Length: 375)
Name: NF6308_low_6
Description: NF6308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6308_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 52025668 - 52026022
Alignment:
| Q |
1 |
gaagttgtatttttgcggatgttccctcattcacttataagtaaatctaaatacatgtgtgtgaaccaaaattttaaaataatgaaagattggaatgcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
52025668 |
gaagttgtatttttgcggatgttccctcattcacttataagtaaatctaaatacatgtatgtgaaccaaaattttaagataatgaaagattggaatgcac |
52025767 |
T |
|
| Q |
101 |
tttaggagaaatttttcagcaagttttttccatgtaacaagttcatggaggctaagcgaaatgttgttgtgttctattatggttcaactagaccattttg |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52025768 |
tttaggagaaatttttcagcaagttctttccatgtaacaagttcatggaggctaagagaattgttgttgtgttctattatggttcaactagaccattttg |
52025867 |
T |
|
| Q |
201 |
tgaagcatgagagagatacaaggccgtgttgaggagatgtcattactttgggttccaggagctcatttaaatacatatctttcgcactttttatataaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52025868 |
tgaagcatgagagagatacaaggccgtgttgagaagatgtcattactttgggttcgaggagctcatttaaatacatatctttcacactttttatataaca |
52025967 |
T |
|
| Q |
301 |
aactagtggctcaaaagtatgttgagcataagagataaaatagaaaacttagaag |
355 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
52025968 |
aactagtggctcaaaagtatgttgagcattagagataaaatagaaaacttggaag |
52026022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University