View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6308_low_7 (Length: 303)
Name: NF6308_low_7
Description: NF6308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6308_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 51 - 289
Target Start/End: Complemental strand, 15128717 - 15128479
Alignment:
| Q |
51 |
tcatccaaaacaagaattctgttccttttaagtagaactcttccgaggcaaaataattggcgttgtcccaagctccaatttccaccttcatcactcactg |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15128717 |
tcatccaaaacaagaattctgttccttttaagtagaactcttccgaggcaaaataattggcgttgtcccaagctccaatttccaccttcatcactcactg |
15128618 |
T |
|
| Q |
151 |
cataacttatcagaattagactttcttagcttatatattgcttgcaaaatcacatattgaacaatagaaagaagaatacgtagcttcgatgagtatattt |
250 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15128617 |
cataacttattagaattagactttcttagcttatatattgcttgcaaaatcacatattgaacaatagaaaggagaatacgtagcttcgatgagtatattt |
15128518 |
T |
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| Q |
251 |
atatagttttgttaatggtgaaagtgaaagagtaagttg |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
15128517 |
atatagttttgttaatggtgaaagtgaaagagtaagttg |
15128479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 54 - 237
Target Start/End: Original strand, 14946366 - 14946549
Alignment:
| Q |
54 |
tccaaaacaagaattctgttccttttaagtagaactcttccgaggcaaaataattggcgttgtcccaagctccaatttccaccttcatcactcactgcat |
153 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14946366 |
tccaaaacaagaattttgttcctcttaagtagaactcttccgaggcaaaacaattggcgttgtcccaagctccaatttccaccttcatcactcactgcaa |
14946465 |
T |
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| Q |
154 |
aacttatcagaattagactttcttagcttatatattgcttgcaaaatcacatattgaacaatagaaagaagaatacgtagcttc |
237 |
Q |
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| T |
14946466 |
aacttatcagaattagactttcataccttatttattggttgtaaaataatatagtgaacaatagaaaggagaaggcgtagcttc |
14946549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 51 - 219
Target Start/End: Original strand, 5287089 - 5287258
Alignment:
| Q |
51 |
tcatccaaaacaagaattctgttccttttaagtagaactcttccgaggcaaaataattggcgttgtcccaagctccaatttccaccttcatcactcactg |
150 |
Q |
| |
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||||||| ||||||||||||||| || ||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||| ||||||| |
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| T |
5287089 |
tcatccagaacaagaattctgtttctcttaagtagaactcttccaaggcaaaacaattgcctttgtcccaagctccaatttccaccttcatcgctcactg |
5287188 |
T |
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| Q |
151 |
cataacttatcagaatt-agactttcttagcttatatattgcttgcaaaatcacatattgaacaatagaa |
219 |
Q |
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|| ||||||||||| || |||||||| | ||||| || || ||||||||||| || ||||||||||||| |
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| T |
5287189 |
caaaacttatcagagttaagactttcatgccttatttaatggttgcaaaatcatatgttgaacaatagaa |
5287258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 5310085 - 5309916
Alignment:
| Q |
51 |
tcatccaaaacaagaattctgttccttttaagtagaactcttccgaggcaaaataattggcgttgtcccaagctccaatttccaccttcatcactcactg |
150 |
Q |
| |
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||||||| |||||||||| |||| || ||||||||||||||||| || ||||| ||||| | ||||| |||||||||||||||||||||||||||||||| |
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| T |
5310085 |
tcatccagaacaagaattttgtttctcttaagtagaactcttccaagacaaaacaattgcctttgtctcaagctccaatttccaccttcatcactcactg |
5309986 |
T |
|
| Q |
151 |
cataacttatcagaattagactttcttagcttatatattgcttgcaaaatcacatattgaacaatagaaa |
220 |
Q |
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|| ||||||||||||||||| |||| || | ||| |||| ||||||||||| ||||||||| ||||||| |
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| T |
5309985 |
caaaacttatcagaattagaatttcataacatatttattcgttgcaaaatcatatattgaaccatagaaa |
5309916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 51 - 212
Target Start/End: Complemental strand, 5316733 - 5316572
Alignment:
| Q |
51 |
tcatccaaaacaagaattctgttccttttaagtagaactcttccgaggcaaaataattggcgttgtcccaagctccaatttccaccttcatcactcactg |
150 |
Q |
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|
||||||| ||| ||||| |||||||| ||||||||||||||||| || ||||| ||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
5316733 |
tcatccagaactagaatcctgttcctcttaagtagaactcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatcactcactg |
5316634 |
T |
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| Q |
151 |
cataacttatcagaattagactttcttagcttatatattgcttgcaaaatcacatattgaac |
212 |
Q |
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|| |||||||||||||||||||||| | | ||| |||| ||||||||||| ||||||||| |
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| T |
5316633 |
caaaacttatcagaattagactttcatgccgtatttattcgttgcaaaatcatatattgaac |
5316572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 59 - 220
Target Start/End: Original strand, 5279370 - 5279532
Alignment:
| Q |
59 |
aacaagaattctgttccttttaagtagaactcttccgaggcaaaataattggcgttgtcccaagctccaatttccaccttcatcactcactgcataactt |
158 |
Q |
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|||||||||||| || |||||||||||||||||||| |||||||| | ||| || ||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
5279370 |
aacaagaattctatttcttttaagtagaactcttccaaggcaaaacagttgccgctgtcctaagctccaatttccaccttcatcactcactgcaaaactt |
5279469 |
T |
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| Q |
159 |
-atcagaattagactttcttagcttatatattgcttgcaaaatcacatattgaacaatagaaa |
220 |
Q |
| |
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|| |||||||| |||| | ||| |||||||| ||||||||||| |||| |||||||||||| |
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| T |
5279470 |
aataagaattaggctttgattgctaatatattggttgcaaaatcatatatagaacaatagaaa |
5279532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 5348047 - 5348146
Alignment:
| Q |
51 |
tcatccaaaacaagaattctgttccttttaagtagaactcttccgaggcaaaataattggcgttgtcccaagctccaatttccaccttcatcactcactg |
150 |
Q |
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|
||||||||||| |||||| | || |||||||| || |||||||| |||||||| ||||| | ||| |||| |||||||||| | ||||||| |||||||| |
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| T |
5348047 |
tcatccaaaactagaattttatttcttttaagaaggactcttccaaggcaaaacaattgtctttggcccatgctccaattttccccttcattactcactg |
5348146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 31523545 - 31523632
Alignment:
| Q |
65 |
aattctgttccttttaagtagaactcttccgaggcaaaataattggcgttgtcccaagctccaatttccaccttcatcactcactgca |
152 |
Q |
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|||| ||||||| || ||||| |||||||| || ||||| | |||||| || || ||||||||||||||||||||||||||||||||| |
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| T |
31523545 |
aattttgttcctcttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatcactcactgca |
31523632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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