View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6308_low_8 (Length: 287)

Name: NF6308_low_8
Description: NF6308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6308_low_8
NF6308_low_8
[»] chr3 (3 HSPs)
chr3 (18-277)||(9694633-9694898)
chr3 (33-66)||(3776538-3776571)
chr3 (167-230)||(9330726-9330789)
[»] chr1 (2 HSPs)
chr1 (25-62)||(48549052-48549089)
chr1 (21-62)||(33693025-33693066)
[»] chr6 (1 HSPs)
chr6 (24-62)||(852539-852577)
[»] chr8 (1 HSPs)
chr8 (21-62)||(32056369-32056409)
[»] chr7 (2 HSPs)
chr7 (25-66)||(30182332-30182373)
chr7 (25-62)||(38123706-38123743)
[»] chr4 (1 HSPs)
chr4 (30-66)||(43807346-43807382)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 9694633 - 9694898
Alignment:
Q  18 tgatctaactttaagctagaaattgtagcttctgattctagaattaattcataattcaattcacatttagacaaaatcaatttaatcataatcgattttt 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  9694633 tgatctaactttaagctagaaattgtagcttctgattatagaattaattcataattcaattcacttttagacaaaatcaatttaatcataatcgaatttt 9694732  T
Q  118 gttactgcagaactgagtacacacagaaagagagagctgacaag------atcgccatccatggcagattggtctcgccttccaaacgaacttcttcaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9694733 gttactgcagaactgagtacacacagaaagagagagctgacaagatcgccatcgccatccatggcagattggtctcgccttccaaacgaacttcttcaat 9694832  T
Q  212 taatttctgaaaaactcgatttcagtgaaatctacattattcgctttcgttccgtttgttcttcat 277  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  9694833 taatttctgaaaaactcaatttcagtgaaatctacattattcgctttcgttcggtttgttcttcat 9694898  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 3776538 - 3776571
Alignment:
Q  33 ctagaaattgtagcttctgattctagaattaatt 66  Q
    ||||||||||||||||||||||||||||||||||    
T  3776538 ctagaaattgtagcttctgattctagaattaatt 3776571  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 9330789 - 9330726
Alignment:
Q  167 catccatggcagattggtctcgccttccaaacgaacttcttcaattaatttctgaaaaactcga 230  Q
    ||||||||||||||||||||| ||||||    |||||||||||| |||||||  ||||||||||    
T  9330789 catccatggcagattggtctcaccttccttcagaacttcttcaactaatttcacaaaaactcga 9330726  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 48549089 - 48549052
Alignment:
Q  25 actttaagctagaaattgtagcttctgattctagaatt 62  Q
    |||| |||||||||||||||||||||||||||||||||    
T  48549089 acttgaagctagaaattgtagcttctgattctagaatt 48549052  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 33693025 - 33693066
Alignment:
Q  21 tctaactttaagctagaaattgtagcttctgattctagaatt 62  Q
    |||||||| ||||||||||||||||||| |||||||| ||||    
T  33693025 tctaacttgaagctagaaattgtagcttttgattctataatt 33693066  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 852539 - 852577
Alignment:
Q  24 aactttaagctagaaattgtagcttctgattctagaatt 62  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  852539 aacttgaagctagaaattgtaggttctgattctagaatt 852577  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 32056369 - 32056409
Alignment:
Q  21 tctaactttaagctagaaattgtagcttctgattctagaatt 62  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
T  32056369 tctaactttaagctagaaattggagcttct-attctagaatt 32056409  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 30182373 - 30182332
Alignment:
Q  25 actttaagctagaaattgtagcttctgattctagaattaatt 66  Q
    |||| |||||| |||||||||||| |||||||||||||||||    
T  30182373 acttgaagctaaaaattgtagcttttgattctagaattaatt 30182332  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 38123743 - 38123706
Alignment:
Q  25 actttaagctagaaattgtagcttctgattctagaatt 62  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  38123743 acttgaagctagaaattgtagcttctaattctagaatt 38123706  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 43807346 - 43807382
Alignment:
Q  30 aagctagaaattgtagcttctgattctagaattaatt 66  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  43807346 aagctagaaattgtagcttctaattctaaaattaatt 43807382  T

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