View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6309_high_1 (Length: 704)
Name: NF6309_high_1
Description: NF6309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6309_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 326 - 686
Target Start/End: Original strand, 4946490 - 4946858
Alignment:
| Q |
326 |
aggtatcctatttaactcttaatctgctttttcttttagggttttctttggtcttctaacatgttagatttcaactgattaannnnnnnnctctt----- |
420 |
Q |
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| T |
4946490 |
aggtatcctatttaactcttaatctgctttttcttttagggttttctttcgtcttctaacatgttagatttcaactgtttaattttgtttttcttttttt |
4946589 |
T |
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| Q |
421 |
---cactttttcagtgcataccacatcaaatcgaatcgaatttttaggaaagaaactgaagatgatgcaaattatgtcccctatctatgtgcctgaactt |
517 |
Q |
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| T |
4946590 |
tttcacttttccagtgcataccacatcaaatcgaatcgaatttttaggaaagaaactgaagatgatgcaaattatgtcccctatctatgtgcctgaactt |
4946689 |
T |
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| Q |
518 |
gtaagcatactactgtcaaagatcacctatcttaaaattcttaaactcttaagtaatcataactatagctgaacttgaaatattaaagtgattcatctta |
617 |
Q |
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| T |
4946690 |
gtaagcatactactgtcaaagatcgcctatcttaaaattcttaaactcttaagtaatcataactatagctgaacttgaaatattaaagtgattcatctta |
4946789 |
T |
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| Q |
618 |
gaatcctagttctcgaataatttttggccaaacattattttctggtcgaactttggattatgatgttta |
686 |
Q |
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| T |
4946790 |
gaatcctagctctcgaataatttttggccaaacattattttctggtcgaactttggattatgatgttta |
4946858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 4946184 - 4946434
Alignment:
| Q |
13 |
aaaatataaagcttaaattctcaaaaggacgtgctaaaatgatgttgcaannnnnnnnnnnntataagatgaccatagaacccatagtttgactaaattt |
112 |
Q |
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| T |
4946184 |
aaaatttaaagcttaaattctcaaaaggacgtgctaaaatgatgttgcaaagagagag----tataagatgactatagaacccatagtttgactaaattt |
4946279 |
T |
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| Q |
113 |
aacgagtgaaaagggatcagccacattataaacaatattaatccatttcacacgtgtataatttaagtcatcacccgagtattatgcgtgtattgtgact |
212 |
Q |
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| T |
4946280 |
aacgagtgaaaagggatcagccgcattataaacaatattaatccatttcacacgtgtataatttaagtcatcacccgagtattatgcgtgtattgtgact |
4946379 |
T |
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| Q |
213 |
ctatataaatcacttacatctctttatttctcatcttacaacaatttggaatattaa |
269 |
Q |
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| T |
4946380 |
c--tataaatcacttacatctctttatttctcatcttacaacaatttggaatattaa |
4946434 |
T |
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