View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6309_low_2 (Length: 655)
Name: NF6309_low_2
Description: NF6309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6309_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 2716468 - 2716702
Alignment:
| Q |
19 |
atattgatcataggatactaacatgtataattatattcaatcatttgtattaatttaacttaatatcagttacgattactaaatatttgtatgtgttgta |
118 |
Q |
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| T |
2716468 |
atattcatcataggatactaacatgtataattatatttaatcatttgtattaatttaaattagtatcaattacgattactaaatatttgtatgtgtttta |
2716567 |
T |
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| Q |
119 |
tccaagtcagttttgtgaccggtgttctagtgcatgtataccatacgttcatggtaccaaataaatacataactaatatattatggcataaagaaatatg |
218 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2716568 |
tccatgtcagttttgtgatcggtgttctagtgcatgtataccatacgttcattgtaccaaataaatacataactaatatattatggcataaagaaatatg |
2716667 |
T |
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| Q |
219 |
ataacaattgatccaataattacattcatatcaaa |
253 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
2716668 |
ataacaattgatccaataattacatttttatcaaa |
2716702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 2719562 - 2719796
Alignment:
| Q |
19 |
atattgatcataggatactaacatgtataattatattcaatcatttgtattaatttaacttaatatcagttacgattactaaatatttgtatgtgttgta |
118 |
Q |
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| T |
2719562 |
atattcatcataggatactaacatgtataattatatttaatcatttgtattaatttaaattagtatcaattacgattactaaatatttgtatgtgtttta |
2719661 |
T |
|
| Q |
119 |
tccaagtcagttttgtgaccggtgttctagtgcatgtataccatacgttcatggtaccaaataaatacataactaatatattatggcataaagaaatatg |
218 |
Q |
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| T |
2719662 |
tccatgtcagttttgtgatcggtgttctagtgcatgtataccatacgttcattgtaccaaataaatacataactaatatattatggcataaagaaatatg |
2719761 |
T |
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| Q |
219 |
ataacaattgatccaataattacattcatatcaaa |
253 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
2719762 |
ataacaattgatccaataattacatttttatcaaa |
2719796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 318 - 648
Target Start/End: Original strand, 2716978 - 2717308
Alignment:
| Q |
318 |
taaagtctaaacacatatcagctgaagtgttgtaattttccaaactcaacttagagatcatattttcttcgtaacctagacttttacgccattcaccaat |
417 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||| |||| |||||||||| |||||| ||||||||||| |
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| T |
2716978 |
taaagtctaaacacatatcagctgaagcattgcaattttccaaactcaatctagagattatatttccttcataacctagacctttacgtcattcaccaat |
2717077 |
T |
|
| Q |
418 |
aagctgatctgctgcatttttagttacacaatccatcggtattaaacatagtacattacttaaaaccgacctatggtgtggtactttgtcttcgatcaat |
517 |
Q |
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| T |
2717078 |
aagctgatctgctgtatttttagttccataacccatcggtattagacatgatacataacttaaaaccgacctatggcttggtactttgtcgccgatcaat |
2717177 |
T |
|
| Q |
518 |
acaactcagtgttcctataataaatgagctatcacatctacaacnnnnnnnatctcggagagcaccaatctgcatgattagaaaactgtggtgagaatag |
617 |
Q |
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||||||| ||||||||||| |||| ||| ||||||||||| || |||||||||||||||||||| || ||||||| ||||||| ||||||||| |
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| T |
2717178 |
acaactcggtgttcctatagtaaaggagatatcacatctaaaagtttttttatctcggagagcaccaatcttcacgattagacaactgtgatgagaatag |
2717277 |
T |
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| Q |
618 |
aatgacaacacagcaggatgatgatgatgtc |
648 |
Q |
| |
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||| |||||||| |||||||||||||||||| |
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| T |
2717278 |
aataacaacacatcaggatgatgatgatgtc |
2717308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 29 - 314
Target Start/End: Original strand, 2721126 - 2721425
Alignment:
| Q |
29 |
taggatactaacatgtataattatattcaatcatttgtattaatttaacttaatatcagttacgattactaaatatttgtatgtgttgtatccaagtcag |
128 |
Q |
| |
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|||||||||||||||| |||||| ||| |||| || |||| | ||| ||| |||| |||| | |||| |||| ||||||||||||||| | ||||| |
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| T |
2721126 |
taggatactaacatgtgtaattactttcgatcacttatatttacctaaattagtatcgattactttgactacatatgtgtatgtgttgtatctatgtcag |
2721225 |
T |
|
| Q |
129 |
ttttgtgaccggtgttc--------tagtgcatgtataccatacgttcatggtaccaaataaatacataactaatatattatggcataaagaaatatgat |
220 |
Q |
| |
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||| ||||||||||||| ||||||||||||| ||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||| ||| |
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| T |
2721226 |
tttcgtgaccggtgttcgtggtttatagtgcatgtataa-atacgttcatgtgatcaaataaatacataaataatacattatggcataaagaaatacgat |
2721324 |
T |
|
| Q |
221 |
aacaattgatccaataattacattcatatcaaagtcc------aac-ctttataatatataagtagataatagtagaaacattgattagtatatatccca |
313 |
Q |
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|||| |||||||| | ||||||| ||||||||||| ||| || |||||||||||||||||||||| |||| |||||||||| | ||||||||| |
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| T |
2721325 |
aacagttgatccatgatttacattgttatcaaagtccagtcataacgctgtataatatataagtagataatattagagacattgattaatctatatccca |
2721424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 2719940 - 2720045
Alignment:
| Q |
207 |
taaagaaatatgataacaattgatccaataattacattcatatcaaagtccaacctttataatatataagtagataatagtagaaacattgattagtata |
306 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||||||||||| |||| |||||||||| ||| |
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| T |
2719940 |
taaagaaatatgataacaattgatctaataattacattcctatcaaagttcaacctt-----tatataagtagataatactagagacattgattacaata |
2720034 |
T |
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| Q |
307 |
tatcccaacaa |
317 |
Q |
| |
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||||||||||| |
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| T |
2720035 |
tatcccaacaa |
2720045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 2716847 - 2716951
Alignment:
| Q |
207 |
taaagaaatatgataacaattgatccaataattacattcatatcaaagtccaacctttataatatataagtagataatagtagaaacattgattagtata |
306 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| |||| ||| ||||||| ||| |
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| T |
2716847 |
taaagaaa-atgataacaattgatccaataattacattcctatcaaagtccaacctt-----tatataagtaaataatactagagacaatgattagcata |
2716940 |
T |
|
| Q |
307 |
tatcccaacaa |
317 |
Q |
| |
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||||||||||| |
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| T |
2716941 |
tatcccaacaa |
2716951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 1935216 - 1935274
Alignment:
| Q |
174 |
accaaataaatacataactaatatattatggcataaagaaatatgataacaattgatcca |
233 |
Q |
| |
|
|||||||||| |||||| || || |||||||||||||||||||||||||||||| ||||| |
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| T |
1935216 |
accaaataaagacataaata-taaattatggcataaagaaatatgataacaatttatcca |
1935274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 2716727 - 2716773
Alignment:
| Q |
271 |
tataagtagataatagtagaaacattgattagtatatatcccaacaa |
317 |
Q |
| |
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||||||||||||||| |||| ||||||||||| ||||||||||||| |
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| T |
2716727 |
tataagtagataatactagagacattgattagcctatatcccaacaa |
2716773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 2719821 - 2719867
Alignment:
| Q |
271 |
tataagtagataatagtagaaacattgattagtatatatcccaacaa |
317 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| ||||||||||||| |
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|
| T |
2719821 |
tataagtagataatactagagacattgattagcctatatcccaacaa |
2719867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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