View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6309_low_3 (Length: 254)

Name: NF6309_low_3
Description: NF6309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6309_low_3
NF6309_low_3
[»] chr1 (3 HSPs)
chr1 (79-169)||(4240307-4240397)
chr1 (180-238)||(4240077-4240135)
chr1 (10-45)||(4240433-4240468)
[»] chr3 (1 HSPs)
chr3 (122-164)||(19923489-19923531)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 4240397 - 4240307
Alignment:
Q  79 atagcttattaccaatatattctccatactttgcttttttctctttttatcatgacacttatactaaactgtgtgtttgaatgaaagaaag 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4240397 atagcttattaccaatatattctccatactttgcttttttctctttttatcatgacacttatactaaactgtgtgtttgaatgaaagaaag 4240307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 4240135 - 4240077
Alignment:
Q  180 tataccagaaaacaccaaaacagacactgacagagcaagctataatccatgttttaatt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4240135 tataccagaaaacaccaaaacagacactgacagagcaagctataatccatgttttaatt 4240077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 4240468 - 4240433
Alignment:
Q  10 catcatcatcatcaggtaagatcatatatgatccct 45  Q
    ||||||||||||||||||||||||||||||||||||    
T  4240468 catcatcatcatcaggtaagatcatatatgatccct 4240433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 19923531 - 19923489
Alignment:
Q  122 tttttatcatgacacttatactaaactgtgtgtttgaatgaaa 164  Q
    ||||||| ||||||||| ||||||||||| |||||||||||||    
T  19923531 tttttatgatgacacttttactaaactgtttgtttgaatgaaa 19923489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University