View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6309_low_4 (Length: 253)
Name: NF6309_low_4
Description: NF6309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6309_low_4 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0232 (4 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 121 - 253
Target Start/End: Complemental strand, 7911923 - 7911789
Alignment:
| Q |
121 |
gatcataattgtacaatttcattcaagaaaaggcaattgcatccaagcaaagaacaactagaacaacattaacttgtatcatggacaaaacatacacata |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7911923 |
gatcataattgtacaatttcattcaagaaaaggcacttgcatccaagcaaagaacaactagaacaacattaacttgtatcatggacaaaacatacacata |
7911824 |
T |
|
| Q |
221 |
ttggtaataaaaggaaa--atgttcctcgaaaact |
253 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |
|
|
| T |
7911823 |
ttggtaataaaacgaaaagatgttcctcgaaaact |
7911789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 47913404 - 47913361
Alignment:
| Q |
115 |
gtgcatgatcataattgtacaatttcattcaagaaaaggcaatt |
158 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47913404 |
gtgcataatcataattgtacaatttcattcatgaaaaggcaatt |
47913361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 47913539 - 47913479
Alignment:
| Q |
23 |
tactctacttctatcta---taatgtcttcacaatccaaccaaacaaaatacacaccagca |
80 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| |||||||||| ||||||| ||||| |
|
|
| T |
47913539 |
tactctacttctatctataataatgtctgcacaatctaaccaaacaatatacacatcagca |
47913479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: scaffold0232
Description:
Target: scaffold0232; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 20307 - 20198
Alignment:
| Q |
115 |
gtgcatgatcataattgtacaatttcattcaagaaaaggcaattgcatccaagcaaagaacaactagaacaacattaacttgtatcatggacaaaacata |
214 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
20307 |
gtgcataatcataattgtacaatttcattcaggaaaaggcaattgcatcca--------------agaacaacattaacttgtatcatggataaaacata |
20222 |
T |
|
| Q |
215 |
cacatattggtaataaaaggaaaa |
238 |
Q |
| |
|
|||| || ||||||||||||||| |
|
|
| T |
20221 |
cacacatcagtaataaaaggaaaa |
20198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 24844 - 24735
Alignment:
| Q |
115 |
gtgcatgatcataattgtacaatttcattcaagaaaaggcaattgcatccaagcaaagaacaactagaacaacattaacttgtatcatggacaaaacata |
214 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
24844 |
gtgcataatcataattgtacaatttcattcaggaaaaggcaattgcatcca--------------agaacaacattaacttgtatcatggataaaacata |
24759 |
T |
|
| Q |
215 |
cacatattggtaataaaaggaaaa |
238 |
Q |
| |
|
|||| || ||||||||||||||| |
|
|
| T |
24758 |
cacacatcagtaataaaaggaaaa |
24735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 20442 - 20388
Alignment:
| Q |
23 |
tactctacttctatcta---taatgtcttcacaatccaaccaaacaaaatacaca |
74 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
20442 |
tactctacttctatctataataatgtctgcacaatctaaccaaacaatatacaca |
20388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 24979 - 24925
Alignment:
| Q |
23 |
tactctacttctatcta---taatgtcttcacaatccaaccaaacaaaatacaca |
74 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
24979 |
tactctacttctatctataataatgtctgcacaatctaaccaaacaatatacaca |
24925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 7189192 - 7189149
Alignment:
| Q |
115 |
gtgcatgatcataattgtacaatttcattcaagaaaaggcaatt |
158 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7189192 |
gtgcataatcataattgtacaatttcattcaggaaaaggcaatt |
7189149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 7189327 - 7189267
Alignment:
| Q |
23 |
tactctacttctatcta---taatgtcttcacaatccaaccaaacaaaatacacaccagca |
80 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| |||||||||| ||||||| ||||| |
|
|
| T |
7189327 |
tactctacttctatctataataatgtctgcacaatctaaccaaacaatatacacatcagca |
7189267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University