View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6310_high_1 (Length: 485)
Name: NF6310_high_1
Description: NF6310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6310_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 48483417 - 48482951
Alignment:
| Q |
19 |
attggacccatcaatccaagattagaaaattattaggaaccaaatgccgagcaatactaaccgaaggagggaagttgctcgagatatcatcatcattcgt |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48483417 |
attggacccattaatccaagattagaaaattattaggaaccaaatgccgagcaatactaaccgaaggagggaagttgctcgagatatcatcatcattcgt |
48483318 |
T |
|
| Q |
119 |
cgtagattactgcataatttaagaattcattatagattacggtataattcaagaataaaccatcaatttaatctctaaactatcactcttcaatttaatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48483317 |
cgtagattactgcataatttaagaattcattatagattactgtataattcaagaataaaccatcaatttaatctctaaactatcactcttcaatttaatc |
48483218 |
T |
|
| Q |
219 |
cctacattataaaatatactaaattgtccttaaactatataaagtccgtcagtttagcctataaagtatataaaaatccaccaatgtagtcccaaatatc |
318 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48483217 |
cctacattataaaatatattaaatagtccttaaactatataaagtccgtcagtttagcctataaagtatataaaaatccaccaatgtagtcccaaatatc |
48483118 |
T |
|
| Q |
319 |
tcaatgcatgatttttatgcatgctggagtgctcttccgttagacacgacaaccggtttcttgctagcaagtcagtttgaggaccgctttggagcaggag |
418 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48483117 |
tcaatgcatgatttttatgcatgcttgagtgctcttccgttagacacgacaaccggtttcttgctagcaagtcagtttgaggaccgctttggagcaggag |
48483018 |
T |
|
| Q |
419 |
caaccatcaattcagaagacactgctacatctgt-----tttggtgctttcatcatacatgcctttg |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48483017 |
caaccatcaattcagaagacactgctacatctgtgattctttggtgctttcatcatacatgcctttg |
48482951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 14198212 - 14198247
Alignment:
| Q |
169 |
aagaataaaccatcaatttaatctctaaactatcac |
204 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14198212 |
aagaataaacgatcaatttaatctctaaactatcac |
14198247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 2205184 - 2205217
Alignment:
| Q |
170 |
agaataaaccatcaatttaatctctaaactatca |
203 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
2205184 |
agaataaaccatcaatttaatccctaaactatca |
2205217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 35464912 - 35464875
Alignment:
| Q |
171 |
gaataaaccatcaatttaatctctaaactatcactctt |
208 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
35464912 |
gaataaaccatcaatttagtctctaaaatatcactctt |
35464875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 41811770 - 41811803
Alignment:
| Q |
170 |
agaataaaccatcaatttaatctctaaactatca |
203 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
41811770 |
agaataaaccatcaattcaatctctaaactatca |
41811803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 26004122 - 26004158
Alignment:
| Q |
171 |
gaataaaccatcaatttaatctctaaactatcactct |
207 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
26004122 |
gaataaaccatcaatttagtctctaaattatcactct |
26004158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 43279044 - 43279076
Alignment:
| Q |
174 |
taaaccatcaatttaatctctaaactatcactc |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
43279044 |
taaaccatcaatttagtctctaaactatcactc |
43279076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 12671329 - 12671285
Alignment:
| Q |
173 |
ataaaccatcaatttaatctctaaactatcactcttcaatttaat |
217 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||||| ||||| |
|
|
| T |
12671329 |
ataaaccatcaatttaatctttcaattatcactcttcaacttaat |
12671285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University