View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6310_high_3 (Length: 414)
Name: NF6310_high_3
Description: NF6310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6310_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 25216635 - 25216245
Alignment:
| Q |
17 |
gtttatagtaaggaacttacagcatccattaacatttgaagatcaggatcaggaataacgtttccgatctctgcaaagccatctttgagctcttcaaatg |
116 |
Q |
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| T |
25216635 |
gtttatagtaaggaacttacagcatccattaacatttgaagatcgggatcaggaataacgtttccgatctctgcaaagccatctttgagctcttcaaatg |
25216536 |
T |
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| Q |
117 |
ttaagtgtccatttttgtctttgtccatcatatcaaacattttcctaaacccgtcgatttgttcatctggcaagttatcagccaccacctaaagagagaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25216535 |
ttaagtgtccatttttgtctttgtccatcatatcaaacattttcctaaacccgtcgatttgttcatctggcaagttatcagccaccacctaaagagagaa |
25216436 |
T |
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| Q |
217 |
ccaaattaattcagaagtgtaaaaacataccaatccctgacttgcatatgaaaactgattcgatgaaacttactctaaggactttctttttgaatctgtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25216435 |
ccaaattaattcagaagtgtaaaaacataccaatccctgacttgcatatgaaaactgattcgatgaaacttactctaaggactttctttttgaatctgtt |
25216336 |
T |
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| Q |
317 |
catcaaggagaattgtttgatcctcgacctcacttggtctccaagagaaacatttttaccatgctccctattttgtatccaagaataatct |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25216335 |
catcaaggagaattgtttgatcctcgacctcacttggtctccaagagaaacatttttaccatgctccctattttgtatccaagaatgatct |
25216245 |
T |
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