View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6310_high_6 (Length: 304)
Name: NF6310_high_6
Description: NF6310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6310_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 54 - 288
Target Start/End: Complemental strand, 31202355 - 31202121
Alignment:
| Q |
54 |
tatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaaggtgaaacgataagccgaaacatgaacaattttacgcctttg |
153 |
Q |
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| T |
31202355 |
tatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaaggtgaaacgatgagccgaaacatgaacaattttacgcctttg |
31202256 |
T |
|
| Q |
154 |
ccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataatcctcatgaattcaatgaagtacctgtgttttacagatctc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202255 |
ccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataatcctcatgaattcaatgaagtacctgtgttttacagatctc |
31202156 |
T |
|
| Q |
254 |
atcattcttctagggccaatgtaagtctatcacat |
288 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
31202155 |
atcattcttctagggccaatgtaagtctatcacat |
31202121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 31215679 - 31215404
Alignment:
| Q |
12 |
atgaacagagccatttattccttaagttcacaggtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaa |
111 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31215679 |
atgaacagagccatttattccttaagtccacaagtgaagcaatattcacaccctctaaataagaaaagaatatatgcatgcatgatcaattgaggaggaa |
31215580 |
T |
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| Q |
112 |
ggtgaaacgataagccgaaacatgaacaattttacgcctttgccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaata |
211 |
Q |
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| ||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
31215579 |
gctgaaacgatgagccgaaacatgaacaattttacgcctttgccgcggctccggagaacagattctagagcctatgatgctcctcctcacacttccaata |
31215480 |
T |
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| Q |
212 |
atcctcatgaattcaatgaagtacctgtgttttacagatctcatcattcttctagggccaatgtaagtctatcacat |
288 |
Q |
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| T |
31215479 |
atcctcatgaattcaatgaagttcctgtgtttttcagatct-atcactcttctagagccaatgtaagtctatcacat |
31215404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 45 - 288
Target Start/End: Complemental strand, 13606136 - 13605893
Alignment:
| Q |
45 |
gtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaaggtgaaacgataagccgaaacatgaacaatttt |
144 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13606136 |
gtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgcatgttcaattgaggaggaaggtgaaacgatgagccgaaacatgaacaatttt |
13606037 |
T |
|
| Q |
145 |
acgcctttgccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataatcctcatgaattcaatgaagtacctgtgtttt |
244 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
13606036 |
acgccttagccagggcttcggagaacagattctagagcctatgatgctccttatcaaacttacaataatcctcatgaattcaattaagtacctgtgtttt |
13605937 |
T |
|
| Q |
245 |
acagatctcatcattcttctagggccaatgtaagtctatcacat |
288 |
Q |
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|| |||||||||| || ||||||| |||||||||| ||||||| |
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| T |
13605936 |
acggatctcatcactccactagggctaatgtaagtcaatcacat |
13605893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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