View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6310_high_8 (Length: 286)
Name: NF6310_high_8
Description: NF6310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6310_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 12803931 - 12803669
Alignment:
| Q |
9 |
gaagaatatggtcgtaaacaaaagttaaaatagggcaagaccattgaagctttttgttgtgttagtttatgcgtgggttttagtggaggatatggcagtg |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12803931 |
gaagaaaatggtcgtaaacaaaagttaaaatagggcaagaccattgaagctttttgttgtgttagtttatgcgtgggttttagtggaggatatggcagtg |
12803832 |
T |
|
| Q |
109 |
tagactgcttgcacgtgagtacagtgtataaatggggttcaaaaaattgaaaatgtttttaagatgaaatacnnnnnnnccaaaacaatctcaacttatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12803831 |
tagactgcttgcacgtgagtacagtgtataaatggggttcaaaaaattgaaaatgtttttaagatgaaatacaaaaaaaccaaaacaatctcaacttatt |
12803732 |
T |
|
| Q |
209 |
ttcttttgttgtgctttgggaacaacgccacttttatgcttattcccattcacatgttgttaa |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12803731 |
ttcttttgttgtgctttgggaacaacgccacttttatgcttattcccattcacatgttgttaa |
12803669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University