View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6310_low_12 (Length: 251)

Name: NF6310_low_12
Description: NF6310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6310_low_12
NF6310_low_12
[»] chr4 (6 HSPs)
chr4 (100-251)||(5956117-5956268)
chr4 (100-235)||(36240455-36240590)
chr4 (115-196)||(41360809-41360890)
chr4 (100-199)||(26936761-26936859)
chr4 (104-241)||(43704478-43704615)
chr4 (100-147)||(30845898-30845944)
[»] chr7 (10 HSPs)
chr7 (100-243)||(14964096-14964239)
chr7 (100-243)||(15393568-15393711)
chr7 (100-251)||(46272929-46273080)
chr7 (100-247)||(30714044-30714191)
chr7 (100-251)||(31601356-31601507)
chr7 (100-244)||(39972254-39972398)
chr7 (100-243)||(47246495-47246637)
chr7 (104-251)||(37416309-37416456)
chr7 (104-251)||(37423841-37423988)
chr7 (100-158)||(20222064-20222122)
[»] chr1 (9 HSPs)
chr1 (100-251)||(43632085-43632236)
chr1 (100-251)||(28794835-28794986)
chr1 (100-251)||(42099727-42099878)
chr1 (100-166)||(26116623-26116688)
chr1 (180-251)||(26116668-26116739)
chr1 (100-147)||(32298924-32298971)
chr1 (100-247)||(35063920-35064066)
chr1 (152-251)||(50542456-50542555)
chr1 (165-241)||(52036185-52036260)
[»] chr3 (9 HSPs)
chr3 (114-251)||(46807968-46808105)
chr3 (100-251)||(3529996-3530144)
chr3 (100-251)||(38341269-38341420)
chr3 (100-160)||(51896317-51896377)
chr3 (100-251)||(42721777-42721928)
chr3 (100-147)||(8627764-8627810)
chr3 (100-147)||(39347018-39347065)
chr3 (15-99)||(38342776-38342856)
chr3 (184-247)||(8627813-8627876)
[»] chr8 (9 HSPs)
chr8 (100-251)||(5338493-5338644)
chr8 (100-216)||(44997760-44997874)
chr8 (100-247)||(34664470-34664615)
chr8 (100-251)||(40524910-40525061)
chr8 (100-251)||(36830571-36830722)
chr8 (100-166)||(42276589-42276655)
chr8 (100-195)||(27474743-27474838)
chr8 (184-243)||(43094372-43094431)
chr8 (114-147)||(43094434-43094467)
[»] chr5 (6 HSPs)
chr5 (100-251)||(20829499-20829650)
chr5 (100-235)||(10013742-10013876)
chr5 (104-251)||(35334760-35334907)
chr5 (100-147)||(38363795-38363842)
chr5 (100-147)||(18342048-18342094)
chr5 (122-247)||(36339486-36339611)
[»] scaffold0009 (1 HSPs)
scaffold0009 (100-163)||(234215-234278)
[»] chr6 (2 HSPs)
chr6 (100-160)||(3147774-3147834)
chr6 (100-136)||(30740455-30740491)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 5956117 - 5956268
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| || ||||| ||||||| |||||||||||||||||||||    
T  5956117 aaactgtaaaaatggggggtgaagttccttttatacttcgcagttgtccggattttatattccggaacacgcattcatgttccggattttataatccgaa 5956216  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    |   ||||| ||||||| |||| || |||| |||||||||||||||| ||||    
T  5956217 aggcattttcgtaatttgcatagggtgtgccagaaggtcatagggtgagaaa 5956268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 36240590 - 36240455
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||| ||||||| | ||||||||||||||||||  |||||||||||| |||||||||||| || ||||| ||||||| ||||||||||||||||||| |    
T  36240590 aaactctaaaaatggagggtgaagttccttttatctttcgcagttgtccgaattttatattccggaacacgcattcatgttccggattttataatccgga 36240491  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaag 235  Q
    |   |||||  ||| || |||| |||||||||||||    
T  36240490 aggcattttcataaattgcatagggcgtgcgagaag 36240455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 41360890 - 41360809
Alignment:
Q  115 ggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatcc 196  Q
    |||| |||||||||||||||||||||||||||| | |||||||||| || || || ||||||| ||||||||||||||||||    
T  41360890 ggggggaagttccttttatacttcgcagttgtccggattttatattccggaatacgcattcatgttccggattttataatcc 41360809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 26936859 - 26936761
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||| | ||| |||||| | ||| ||  ||  || ||||||||| |||||||||||    
T  26936859 aaactgtaaaaat-gggggtgaagttccttttatacttcgcaattgtccggattatatattccaaaatacgtatagatgttccggattatataatccgaa 26936761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 43704478 - 43704615
Alignment:
Q  104 tgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaaaaat 203  Q
    ||||||| | ||||||||||| ||||||||||||||||||||||   | | ||||||||| || |  |||  || |||| |||| || |||| |||  |     
T  43704478 tgtaaaactggggggtgaagtcccttttatacttcgcagttgtccataatatatatttcggaatatgcatatatgttccagattataaaatctgaaggac 43704577  T
Q  204 atttttgtaatttacatatggcgtgcgagaaggtcata 241  Q
    ||||| ||||||| |||| |||||||||||||| ||||    
T  43704578 attttagtaatttgcatagggcgtgcgagaaggccata 43704615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 30845898 - 30845944
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtc 147  Q
    ||||||||||||| |||||| || ||||||||||||||||||||||||    
T  30845898 aaactgtaaaaat-gggggtaaatttccttttatacttcgcagttgtc 30845944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 100 - 243
Target Start/End: Complemental strand, 14964239 - 14964096
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||| |||||||  ||||||| |||| ||||||||||||||||    
T  14964239 aaactgtaaaaatggggggtgaagttccttttatacttcgcagttatccgaattttatattccgaaacatgcattcatgttccagattttataatccgaa 14964140  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagg 243  Q
    |   ||||| ||||||| |||| |||||||||||||| ||||||    
T  14964139 aggcattttcgtaatttgcatagggcgtgcgagaaggccatagg 14964096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 100 - 243
Target Start/End: Complemental strand, 15393711 - 15393568
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||| |||||||  ||||||| |||| ||||||||||||||||    
T  15393711 aaactgtaaaaatggggggtgaagttccttttatacttcgcagttatccgaattttatattccgaaacatgcattcatgttccagattttataatccgaa 15393612  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagg 243  Q
    |   ||||| ||||||| |||| |||||||||||||| ||||||    
T  15393611 aggcattttcgtaatttgcatagggcgtgcgagaaggccatagg 15393568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 46272929 - 46273080
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||  | ||||| |||| |||||| | |||||||||||||||    
T  46272929 aaactgtaaaaatggggggtgaagttccttttatacttcgcagttgtccggattttatattctggaacacacatttatattctgaattttataatccgaa 46273028  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    |   ||||| ||||||| |||| |||||||||||||| ||||||||||||||    
T  46273029 atgcattttcgtaatttgcatagggcgtgcgagaaggccatagggtgggaaa 46273080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 30714044 - 30714191
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||| |||||||| ||||||| |||||| || |||||||| ||    
T  30714044 aaactgtaaaaatggggggtgaagttccttttatacttcgcagttgtcctgattttatattccgaaacacgcattcatgttccgggttatataatccaaa 30714143  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgg 247  Q
    |   ||||| ||||||| |||| |||||| ||||||| ||||||||||    
T  30714144 aggcattttcgtaatttgcatagggcgtgtgagaaggccatagggtgg 30714191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 31601507 - 31601356
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||| |  ||||  ||||||| |||| ||||||||||||| ||    
T  31601507 aaactgtaaaaatggagggtgaagttccttttatacttcgcagttgtccggattttatattccagaacatgcattcatgttccagattttataatccaaa 31601408  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    | | |||||  ||||||||||| |||||||||||||| |||||| |||||||    
T  31601407 agacattttcataatttacatagggcgtgcgagaaggccataggatgggaaa 31601356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 244
Target Start/End: Complemental strand, 39972398 - 39972254
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| |||| |||||||||||||||||||||||| |||| |||||||||||| || || || ||||||| ||||||||| |||||||| ||    
T  39972398 aaactgtaaaaatgggggctgaagttccttttatacttcgcaggtgtccgaattttatattccggaatacgcattcatgttccggattatataatccaaa 39972299  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcataggg 244  Q
    |   ||||| |||||||||||| ||||||| |||||| |||||||    
T  39972298 aggcattttcgtaatttacatagggcgtgctagaaggccataggg 39972254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 243
Target Start/End: Complemental strand, 47246637 - 47246495
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    |||||||| |||| |||||||||||||| ||||||||||||||||||| | ||||||| |  || ||||| ||||||| |||| |||||||||||| |||    
T  47246637 aaactgtagaaatggggggtgaagttccgtttatacttcgcagttgtccggattttat-taccggaacacgcattcatgttccagattttataatctgaa 47246539  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagg 243  Q
    |   ||||| ||||||| |||| || |||| |||||| ||||||    
T  47246538 aggcattttcgtaatttgcatagggtgtgcaagaaggccatagg 47246495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 251
Target Start/End: Original strand, 37416309 - 37416456
Alignment:
Q  104 tgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaaaaat 203  Q
    ||||||||| |||||||||||||||||||||||||||| || || | ||| ||| || ||||| ||  ||  || ||||||||| |||||||||||| |     
T  37416309 tgtaaaaatggggggtgaagttccttttatacttcgcaattttccggattctattttccgaaatacatatagatgttccggattatataatccgaaagac 37416408  T
Q  204 atttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    || || ||||||| |||| |||| | ||||||  ||||||||||||||    
T  37416409 atgttggtaatttgcatagggcgcgtgagaagaccatagggtgggaaa 37416456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 251
Target Start/End: Original strand, 37423841 - 37423988
Alignment:
Q  104 tgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaaaaat 203  Q
    ||||||||| |||||||||||||||||||||||||||| || || | ||| ||| || ||||| ||  ||  || ||||||||| |||||||||||| |     
T  37423841 tgtaaaaatggggggtgaagttccttttatacttcgcaattttccggattctattttccgaaatacatatagatgttccggattatataatccgaaagac 37423940  T
Q  204 atttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    || || ||||||| |||| |||| | ||||||  ||||||||||||||    
T  37423941 atgttggtaatttgcatagggcgcgtgagaagaccatagggtgggaaa 37423988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 20222064 - 20222122
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttata 158  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  20222064 aaactgtaaaaatggtgggtgaagttccttttatacttcgcagttgtctggattttata 20222122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 43632085 - 43632236
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| || ||||| ||||||| |||||||||||||||||| ||    
T  43632085 aaactgtaaaaatggggggtgaagttccttttatacttcacagttgtccgaattttatattccggaacacgcattcatgttccggattttataatccaaa 43632184  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    |   ||||| ||||||| |||| ||||| |||||||| ||||||||| ||||    
T  43632185 aggcattttcgtaatttgcataaggcgtacgagaaggccatagggtgagaaa 43632236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 28794835 - 28794986
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| |||||| |||| |||||||||||||||| ||||| | | | || ||| || || || |||  || ||||||||| || ||||||||    
T  28794835 aaactgtaaaaatggggggtaaagtcccttttatacttcgcaattgtccggaatataaattccggaatacgcatagatgttccggattataaaatccgaa 28794934  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
        ||||| ||||||| |||| ||||| ||||||||||||||| |||||||    
T  28794935 gggcattttggtaatttgcatagggcgttcgagaaggtcataggctgggaaa 28794986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 42099727 - 42099878
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| ||||||||||| | |||||||||||||||||||| | | | || ||| || || || |||  || ||||||||| || |||  |||    
T  42099727 aaactgtaaaaatggggggtgaagtccgttttatacttcgcagttgtccggaatataaattccggaatacgcatagatgttccggattataaaatttgaa 42099826  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
        ||||| |||||||  ||| |||||||||||||||||| ||||||||||    
T  42099827 gggcattttggtaatttgtataaggcgtgcgagaaggtcatcgggtgggaaa 42099878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 26116623 - 26116688
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaa 166  Q
    ||||||||||||| |||||||||||||||||||||||| | ||||||| | |||||||| |||||||    
T  26116623 aaactgtaaaaat-gggggtgaagttccttttatactttgtagttgtccggattttataattcgaaa 26116688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 26116668 - 26116739
Alignment:
Q  180 tccggattttataatccgaaaaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    ||||||||||||||| |||||   ||||| ||||||| |||| || |||||| |||||||||||||||||||    
T  26116668 tccggattttataattcgaaaggcattttcgtaatttgcatagggtgtgcgaaaaggtcatagggtgggaaa 26116739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 32298924 - 32298971
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtc 147  Q
    ||||||||||||| || |||||||| ||||||||||||||||||||||    
T  32298924 aaactgtaaaaatgggaggtgaagtcccttttatacttcgcagttgtc 32298971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 247
Target Start/End: Complemental strand, 35064066 - 35063920
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| |||||||| ||  ||||||||||||||||||||| | | |||||||| || || || | |  || ||||| ||| || ||||||||    
T  35064066 aaactgtaaaaat-gggggtgaggtcacttttatacttcgcagttgtccggaatttatattccggaaaacgcgtagatgttccgaattataaaatccgaa 35063968  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgg 247  Q
        ||||| |||||||  ||| ||| |||||||||||||||||||||    
T  35063967 gggcattttcgtaatttggatagggcatgcgagaaggtcatagggtgg 35063920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 50542555 - 50542456
Alignment:
Q  152 ttttatatttcgaaacacccattcatattccggattttataatccgaaaaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    ||||||||| || ||||| ||||||| |||||||||||||| |||||||   ||||| ||||||| |||| | |||||||||| |  |||| ||||||||    
T  50542555 ttttatattccggaacacgcattcatgttccggattttatattccgaaaggcattttcgtaatttgcataggacgtgcgagaaagatatagagtgggaaa 50542456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 52036260 - 52036185
Alignment:
Q  165 aacacccattcatattccggattttataatccgaaaaatatttttgtaatttacatatggcgtgcgagaaggtcata 241  Q
    ||||| ||||||| ||||| |||||||||||| ||| | ||||| ||||||| ||||  ||||||||||||| ||||    
T  52036260 aacacgcattcatgttccgaattttataatcc-aaagacattttcgtaatttgcatagagcgtgcgagaaggccata 52036185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 46808105 - 46807968
Alignment:
Q  114 gggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaaaaatatttttgtaa 213  Q
    |||||||||||||||||||||||||||||||| | | |||||| ||| |||||||| ||||||| ||||| |||||||||||| ||| | ||||| ||||    
T  46808105 gggggtgaagttccttttatacttcgcagttggccggattttacattccgaaacacgcattcatgttccgaattttataatccaaaagacattttcgtaa 46808006  T
Q  214 tttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  46808005 tttacatagggcgtgcgagaaggccatagggtgggaaa 46807968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 3529996 - 3530144
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||| ||    
T  3529996 aaactttaaaaat-gggggtgaagttccttttatactttgcagttgtccgaattttatatttcggaacacgcattcatgttccggattttataatcctaa 3530094  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    | | ||||| ||||||| |  |||| |  |||||||||||||||||||||||    
T  3530095 agacattttcgtaatttgc--atggggctcgagaaggtcatagggtgggaaa 3530144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 38341420 - 38341269
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||  | ||||| ||||||| |||| ||||||||||||| ||    
T  38341420 aaactgtaaaaatggagggtgaatttccttttatacttcgcagttgtccgaattttatattctggaacacgcattcatgttccagattttataatccaaa 38341321  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    |   ||||| ||| ||| |||| |||||||||||||||||| ||||||||||    
T  38341320 aggcattttcgtactttgcatagggcgtgcgagaaggtcatggggtgggaaa 38341269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 51896377 - 51896317
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatt 160  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  51896377 aaactgtaaaaatggggggtgaagttccttttatacttcgcaattgtccgaattttatatt 51896317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 42721928 - 42721777
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| || ||||||||||||||||||||||||| || || | ||| |||||| |  || || |||  || ||||||||| |||||||||||    
T  42721928 aaactgtaaaaatgggcggtgaagttccttttatacttcgcaattttccggattctatattccagaatacgcatagatgttccggattatataatccgaa 42721829  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    |    |||| ||||||| |||| |||| ||||||||| |||| ||| |||||    
T  42721828 aggcgttttggtaatttgcatagggcgcgcgagaaggccataaggtaggaaa 42721777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 8627764 - 8627810
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtc 147  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8627764 aaactgtaaaaat-gggggtgaagttccttttatacttcgcagttgtc 8627810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 39347065 - 39347018
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtc 147  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  39347065 aaactgtaaaaatggggggtgaaatcccttttatacttcgcagttgtc 39347018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 38342856 - 38342776
Alignment:
Q  15 tctaactttaaattgagccttgcaagtggacggtgattaagattgaatctttcagattaatccgtgcttaaatcgaataccgagt 99  Q
    |||||||||| ||||||  |||||||||||  |||  ||||||||||||||| | ||||||  ||||||||||||||||||||||    
T  38342856 tctaactttacattgagttttgcaagtgga--gtg--taagattgaatcttttaaattaattagtgcttaaatcgaataccgagt 38342776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 8627813 - 8627876
Alignment:
Q  184 gattttataatccgaaaaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgg 247  Q
    ||||||||||||| |||   ||||| ||||||| |||| |||||||||||||| ||||||||||    
T  8627813 gattttataatcccaaaggcattttcgtaatttgcatagggcgtgcgagaaggccatagggtgg 8627876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 5338644 - 5338493
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||  ||||| ||||| || || || ||||||| ||| | |||||||||||||||    
T  5338644 aaactgtaaaaatggggggtgaagttccttttatacttcgcagttgtccaaatttcatattccggaatacgcattcatgttctgcattttataatccgaa 5338545  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    |   |||||  |||||| |||| |||||||||||||| |||||| |||||||    
T  5338544 aggcattttcataatttgcatagggcgtgcgagaaggccataggatgggaaa 5338493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 44997760 - 44997874
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||  ||||| ||||||| |||||||||||||||||| ||    
T  44997760 aaactgtaaaaat--ggggtgaagttccttttatacttcgcagttgtccgaattttatatttcagaacacgcattcatgttccggattttataatccaaa 44997857  T
Q  200 aaatatttttgtaattt 216  Q
    | | ||||| |||||||    
T  44997858 agacattttcgtaattt 44997874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 34664470 - 34664615
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    |||||||||||||  ||||||||||| ||||||||||||||| |||||   |||||||||| || ||||  ||||||| |||||||||||||||||||||    
T  34664470 aaactgtaaaaat--ggggtgaagtttcttttatacttcgcaattgtcctgattttatattccggaacatgcattcatgttccggattttataatccgaa 34664567  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgg 247  Q
    |   ||||| ||||||| |||| |||||||||||||| ||||||||||    
T  34664568 aggcattttcgtaatttgcatagggcgtgcgagaaggccatagggtgg 34664615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 40524910 - 40525061
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||||| ||| | || |||||| || |  |||  || ||||||||| || ||| ||||    
T  40524910 aaactgtaaaaatggggggtgaagtccctttaatacttcgcagttgtccgaaatataaatttcggaatatgcatagatgttccggattataaaattcgaa 40525009  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
      | ||||| ||||||| |||| |||||||||||||| ||||||||||||||    
T  40525010 ggacattttggtaatttgcatagggcgtgcgagaaggccatagggtgggaaa 40525061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 36830722 - 36830571
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||||| | | |||||||| || || || |||  || ||||||||| || |||  |||    
T  36830722 aaactgtaaaaatggggggtgaagtcccttttatactttgcagttgtccggaatttatattccggaatacgcatagatgttccggattataaaatttgaa 36830623  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
      ||||||| |||||| |||||  ||||||||||||| |||||| |||||||    
T  36830622 ggatattttggtaattaacatagagcgtgcgagaaggccataggatgggaaa 36830571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 42276655 - 42276589
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaa 166  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||| | ||| |||||| |||||    
T  42276655 aaactgtaaaaatggggggtgaagttccttttatacttcgcaattgtccggattctatattccgaaa 42276589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 27474743 - 27474838
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatc 195  Q
    ||||||||||||| | |||||||||||||||||||||||||| ||||| | ||| |||||| ||||| ||  ||  || ||||||||| |||||||    
T  27474743 aaactgtaaaaatggagggtgaagttccttttatacttcgcaattgtccggattctatattccgaaatacgtatagatgttccggattatataatc 27474838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 43094431 - 43094372
Alignment:
Q  184 gattttataatccgaaaaatatttttgtaatttacatatggcgtgcgagaaggtcatagg 243  Q
    ||||||||||||||||| | ||||| ||||||| |||| || ||||||||||||||||||    
T  43094431 gattttataatccgaaagacattttcgtaatttgcatagggtgtgcgagaaggtcatagg 43094372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 43094467 - 43094434
Alignment:
Q  114 gggggtgaagttccttttatacttcgcagttgtc 147  Q
    ||||||||||||||||||||||||||||||||||    
T  43094467 gggggtgaagttccttttatacttcgcagttgtc 43094434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 20829499 - 20829650
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| | | |||||||| || || || |||  || ||||||||| || |||| |||    
T  20829499 aaactgtaaaaatggggggtgaagtcccttttatacttcgcagttgtccggaatttatattccggaagacgcatagatgttccggattataaaatctgaa 20829598  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
       |||||| ||||||| |||| |||||||||||||| |||| | |||||||    
T  20829599 gggtattttggtaattttcatagggcgtgcgagaaggccatatgttgggaaa 20829650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 10013876 - 10013742
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaa 199  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||||||||||| || || |||  || ||||||||| || | ||| ||    
T  10013876 aaactgtaaaaat-gggggtgaagtcccttttatacttcgcagttgtccgaaatttatatttcggaaaacgcatagatgttccggattataaattccaaa 10013778  T
Q  200 aaatatttttgtaatttacatatggcgtgcgagaag 235  Q
       |||||| ||||||| |||| |||||||||||||    
T  10013777 gggtattttcgtaattttcatagggcgtgcgagaag 10013742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 35334907 - 35334760
Alignment:
Q  104 tgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaaaaat 203  Q
    ||||||| | |||||||||||||||||||||||||||| ||||| | ||| |||||| ||||| ||  ||  || |||| |||| ||||||  |||  |     
T  35334907 tgtaaaagtggggggtgaagttccttttatacttcgcaattgtccggattctatattccgaaatacatatagatgttccagattatataatatgaaggac 35334808  T
Q  204 atttttgtaatttacatatggcgtgcgagaaggtcatagggtgggaaa 251  Q
    || || ||||||| |||| |||| |||| |||||||||||||||||||    
T  35334807 atgttggtaatttgcatagggcgcgcgataaggtcatagggtgggaaa 35334760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 38363842 - 38363795
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtc 147  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||    
T  38363842 aaactgtaaaaatggggggtgaagtctcttttatacttcgcagttgtc 38363795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 18342048 - 18342094
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtc 147  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||    
T  18342048 aaactgtaaaaat-gggggtgaagttccttttatacttcacaattgtc 18342094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 247
Target Start/End: Complemental strand, 36339611 - 36339486
Alignment:
Q  122 agttccttttatacttcgcagttgtctgaattttatatttcgaaacacccattcatattccggattttataatccgaaaaatatttttgtaatttacata 221  Q
    |||||||||||||||||||| ||||| | ||| ||||||  |||| ||  ||  ||| |||||||| ||||||| |||    || || ||||||| ||||    
T  36339611 agttccttttatacttcgcaattgtccggattctatattctgaaatacgtatagataatccggattatataatctgaagggcatgttggtaatttgcata 36339512  T
Q  222 tggcgtgcgagaaggtcatagggtgg 247  Q
     |||| ||||||||| ||||||||||    
T  36339511 gggcgcgcgagaaggccatagggtgg 36339486  T

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Target: scaffold0009 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 234278 - 234215
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatttcg 163  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||| | |||||||||||||    
T  234278 aaactgtaaaaatagggggtgaagttcctttgatacttcgcaattgtccggattttatatttcg 234215  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 3147774 - 3147834
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatacttcgcagttgtctgaattttatatt 160  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| | | ||||||||    
T  3147774 aaactgtaaaaatggtgggtgaagttccttttatacttcgcagttgtccggaatttatatt 3147834  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 30740491 - 30740455
Alignment:
Q  100 aaactgtaaaaatagggggtgaagttccttttatact 136  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  30740491 aaactgtaaaaatggggggtgaacttccttttatact 30740455  T

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