View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6310_low_4 (Length: 434)
Name: NF6310_low_4
Description: NF6310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6310_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Original strand, 43450648 - 43451051
Alignment:
| Q |
13 |
aaaatggttaaggtaggagatgtattttacttttagcttttcctaacaggagaacaaaagcagagagaatgaagagtacctgctcttccactgtcgcata |
112 |
Q |
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| T |
43450648 |
aaaatggttaaggtaggagatgtattttacttttagcttttcctaacaggagaacaaaagcagagagaatgaagagtacctgctcttccactgtcgcata |
43450747 |
T |
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| Q |
113 |
taccacagcatttgttacccctggtttgccaatgtagcaggatgtatctgttccaaccagtaaaaccttatgcagggcgatctacaattccaagagttaa |
212 |
Q |
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| T |
43450748 |
taccacagcatttgttaccactggtttgccaatgtagcaggatgtatctgttccaaccagtaaaaccttatgcagggcgatctacaattccaagagttaa |
43450847 |
T |
|
| Q |
213 |
aattaatgtacagtgcatnnnnnnntgctttgaaaataacagcagatgttcagataatggaaaaggaagaaatcgcttcaaagggaaaagtgacaaatta |
312 |
Q |
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| T |
43450848 |
aattaatgtacagtgcataaaaaaacgctttgaaaataacagcagatgttcagataatggaaaaggaagaaatcgcttcaaagggaaaagtgacaaatta |
43450947 |
T |
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| Q |
313 |
taatcattggtttgaaaaccaatggttataatttcaatcattcatttctcacatcatatggttaaaatacctctttaggcctagtttcttataacttact |
412 |
Q |
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| T |
43450948 |
taatcattggtttgaaaaccaatggttataatttcaatcattcatttctcacatcatatggttaaaatacctctttaggcctagtttcttataacttact |
43451047 |
T |
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| Q |
413 |
tttg |
416 |
Q |
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|||| |
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| T |
43451048 |
tttg |
43451051 |
T |
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