View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6310_low_6 (Length: 354)

Name: NF6310_low_6
Description: NF6310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6310_low_6
NF6310_low_6
[»] chr3 (12 HSPs)
chr3 (191-336)||(38339702-38339849)
chr3 (51-161)||(38339910-38340020)
chr3 (262-335)||(46965901-46965974)
chr3 (259-335)||(46965807-46965883)
chr3 (259-323)||(46965989-46966053)
chr3 (261-335)||(27511831-27511904)
chr3 (262-315)||(33256435-33256488)
chr3 (273-316)||(36545969-36546012)
chr3 (273-316)||(36562302-36562345)
chr3 (300-335)||(46574363-46574398)
chr3 (262-315)||(43158162-43158215)
chr3 (279-327)||(29023872-29023920)
[»] chr4 (7 HSPs)
chr4 (261-335)||(18767966-18768040)
chr4 (262-332)||(47288192-47288262)
chr4 (259-332)||(35936075-35936148)
chr4 (260-335)||(34995427-34995502)
chr4 (262-335)||(1872714-1872787)
chr4 (262-335)||(12595522-12595595)
chr4 (259-335)||(27371247-27371323)
[»] chr7 (8 HSPs)
chr7 (264-336)||(1504254-1504326)
chr7 (262-333)||(18889919-18889990)
chr7 (262-336)||(17479116-17479190)
chr7 (262-336)||(17483552-17483626)
chr7 (262-336)||(17569588-17569662)
chr7 (262-336)||(17574024-17574098)
chr7 (263-325)||(49043441-49043503)
chr7 (266-335)||(37845257-37845326)
[»] chr6 (4 HSPs)
chr6 (259-335)||(25127719-25127795)
chr6 (280-334)||(11014106-11014160)
chr6 (262-335)||(3552047-3552120)
chr6 (262-335)||(17181827-17181900)
[»] chr2 (9 HSPs)
chr2 (264-333)||(38249500-38249569)
chr2 (259-333)||(14255411-14255485)
chr2 (263-335)||(42430756-42430828)
chr2 (261-314)||(4080580-4080633)
chr2 (280-336)||(9521913-9521969)
chr2 (261-324)||(7667228-7667291)
chr2 (259-324)||(44050132-44050197)
chr2 (259-335)||(17263964-17264040)
chr2 (273-324)||(32544143-32544195)
[»] chr1 (5 HSPs)
chr1 (261-335)||(31317321-31317395)
chr1 (259-332)||(21433289-21433362)
chr1 (246-324)||(29706579-29706657)
chr1 (259-336)||(6949869-6949946)
chr1 (263-324)||(43367794-43367855)
[»] chr5 (3 HSPs)
chr5 (263-324)||(18395221-18395281)
chr5 (257-335)||(19952106-19952184)
chr5 (259-335)||(27546172-27546248)
[»] chr8 (5 HSPs)
chr8 (258-321)||(32735025-32735088)
chr8 (259-334)||(37754669-37754744)
chr8 (261-335)||(38585508-38585582)
chr8 (259-336)||(36514453-36514530)
chr8 (280-324)||(32020371-32020415)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 191 - 336
Target Start/End: Complemental strand, 38339849 - 38339702
Alignment:
Q  191 tgagaattttgtattatgtatatcgatatt--aaggctacaaaataactcaaacgaataattttataataaggtgtgttattcaaacaaccatttgtgtg 288  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38339849 tgagaattttgtattatgtatatcgatattttaaggctacaaaataactcaaaggaataattttataataaggtgtgttattcaaacaaccatttgtgtg 38339750  T
Q  289 ataaattttaggacaatcataaatttagaaagaaaagtaggtattgat 336  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  38339749 ataaattttaggacaattataaatttagaaagaaaattaggtattgat 38339702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 38340020 - 38339910
Alignment:
Q  51 gggcactttccccaatgcaacatacatagatccgctgnnnnnnnaggggtacatacatagatcgtgtatgatgactgtgactcatcctttacaacgatca 150  Q
    |||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38340020 gggcacttaccccaatgcaacatacatagatccgctgtttttttaggggtacatacatagatcgtgtatgatgactgtgactcaacctttacaacgatca 38339921  T
Q  151 ttatcattttc 161  Q
    |||||||||||    
T  38339920 ttatcattttc 38339910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 46965901 - 46965974
Alignment:
Q  262 tgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    |||||||||  |||||| |||||||||| || |||||||||||||||||||||| |||||||||||||||||||    
T  46965901 tgtgttatttgaacaacaatttgtgtgacaacttttaggacaatcataaatttacaaagaaaagtaggtattga 46965974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 46965807 - 46965883
Alignment:
Q  259 aggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    |||||||||||| |||| | ||||||||||| || ||||||||||| |||||||||| |||||||||||||||||||    
T  46965807 aggtgtgttatttaaacgatcatttgtgtgacaacttttaggacaaccataaatttacaaagaaaagtaggtattga 46965883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 46965989 - 46966053
Alignment:
Q  259 aggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaa 323  Q
    ||||||||||||  ||||||||||||||||| || |||| ||||||||||||||||| |||||||    
T  46965989 aggtgtgttatttgaacaaccatttgtgtgacaacttttcggacaatcataaatttacaaagaaa 46966053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 27511904 - 27511831
Alignment:
Q  261 gtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    ||||||||||  |||||| |||||||||| || |||| |||||| |||||||||| |||||||||||| ||||||    
T  27511904 gtgtgttatttgaacaacaatttgtgtgacaactttt-ggacaaccataaatttacaaagaaaagtagatattga 27511831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 33256488 - 33256435
Alignment:
Q  262 tgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaattta 315  Q
    |||||||||  ||||||||||||||||| || ||||||||||| ||||||||||    
T  33256488 tgtgttatttgaacaaccatttgtgtgacaacttttaggacaaccataaattta 33256435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 36546012 - 36545969
Alignment:
Q  273 aacaaccatttgtgtgataaattttaggacaatcataaatttag 316  Q
    |||||||||||||||||||| ||||  |||||||||||||||||    
T  36546012 aacaaccatttgtgtgataactttttagacaatcataaatttag 36545969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 36562302 - 36562345
Alignment:
Q  273 aacaaccatttgtgtgataaattttaggacaatcataaatttag 316  Q
    |||||||||||||||||||| ||||  |||||||||||||||||    
T  36562302 aacaaccatttgtgtgataactttttagacaatcataaatttag 36562345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 46574398 - 46574363
Alignment:
Q  300 gacaatcataaatttagaaagaaaagtaggtattga 335  Q
    ||||| ||||||||||||||||||||||||||||||    
T  46574398 gacaaccataaatttagaaagaaaagtaggtattga 46574363  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 43158162 - 43158215
Alignment:
Q  262 tgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaattta 315  Q
    |||||||||  ||||||||||| | ||||||||||| | |||||||||||||||    
T  43158162 tgtgttatttgaacaaccatttttatgataaattttggtacaatcataaattta 43158215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 29023872 - 29023920
Alignment:
Q  279 catttgtgtgataaattttaggacaatcataaatttagaaagaaaagta 327  Q
    ||||||||||| || |||  ||||||||||||||||| |||||||||||    
T  29023872 catttgtgtgacaattttcgggacaatcataaatttataaagaaaagta 29023920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 18768040 - 18767966
Alignment:
Q  261 gtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    |||||||||| ||||||  ||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||    
T  18768040 gtgtgttatttaaacaattatttgtgtgataacttttaagacaaccataaatttataaagaaaagtaggtattga 18767966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 47288262 - 47288192
Alignment:
Q  262 tgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtat 332  Q
    |||||||||  || ||||||||||||||||| |||| | |||| |||||||||| ||||||||||||||||    
T  47288262 tgtgttatttgaataaccatttgtgtgataatttttggaacaaccataaatttacaaagaaaagtaggtat 47288192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Complemental strand, 35936148 - 35936075
Alignment:
Q  259 aggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtat 332  Q
    ||||||||||||  ||||| ||||||||||| || ||||||||||| |||| ||| | ||||||||||||||||    
T  35936148 aggtgtgttatttgaacaatcatttgtgtgacaacttttaggacaaccatacattcacaaagaaaagtaggtat 35936075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 335
Target Start/End: Complemental strand, 34995502 - 34995427
Alignment:
Q  260 ggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    |||||||||||  ||||| ||||||| |||||| |||  |||||| |||||||||| |||||||| ||||||||||    
T  34995502 ggtgtgttatttgaacaatcatttgtttgataactttagggacaaccataaatttataaagaaaaataggtattga 34995427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Complemental strand, 1872787 - 1872714
Alignment:
Q  262 tgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    |||||||||  ||||| ||| ||  |||||| |||| ||||||||||||||||| |||||  ||||||||||||    
T  1872787 tgtgttatttgaacaatcatctggatgataacttttgggacaatcataaatttacaaagactagtaggtattga 1872714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 12595522 - 12595595
Alignment:
Q  262 tgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    |||||||||  |||||||||||   ||| || |||| |||||| |||||||||| |||| ||||||||||||||    
T  12595522 tgtgttatttgaacaaccattttgatgacaatttttgggacaaccataaatttataaaggaaagtaggtattga 12595595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 335
Target Start/End: Complemental strand, 27371323 - 27371247
Alignment:
Q  259 aggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    ||||||||||||  |||||| |||| | ||| || || |  ||||| |||||||||| |||||||||||||||||||    
T  27371323 aggtgtgttatttgaacaacaatttatttgagaacttatgagacaaccataaatttacaaagaaaagtaggtattga 27371247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 1504254 - 1504326
Alignment:
Q  264 tgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattgat 336  Q
    |||||||  |||||||||||  ||||||| |||| ||||||||||||||||| ||||||||||||||||||||    
T  1504254 tgttatttgaacaaccattttggtgataacttttgggacaatcataaatttataaagaaaagtaggtattgat 1504326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 262 - 333
Target Start/End: Original strand, 18889919 - 18889990
Alignment:
Q  262 tgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtatt 333  Q
    |||||||||  ||||| ||||||||||| || |||||||||||||||||||||| |||||||| ||||||||    
T  18889919 tgtgttatttcaacaatcatttgtgtgacaatttttaggacaatcataaatttacaaagaaaattaggtatt 18889990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 17479190 - 17479116
Alignment:
Q  262 tgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattgat 336  Q
    ||||||||| |||||||||| || ||||||| |||| ||||| ||||||||||| |||||  |||||||||||||    
T  17479190 tgtgttatttaaacaaccatctgagtgataacttttgggacagtcataaatttacaaagagtagtaggtattgat 17479116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 17483626 - 17483552
Alignment:
Q  262 tgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattgat 336  Q
    ||||||||| |||||||||| || ||||||| |||| ||||| ||||||||||| |||||  |||||||||||||    
T  17483626 tgtgttatttaaacaaccatctgagtgataacttttgggacagtcataaatttacaaagagtagtaggtattgat 17483552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 17569588 - 17569662
Alignment:
Q  262 tgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattgat 336  Q
    ||||||||| |||||||||| || ||||||| |||| ||||| ||||||||||| |||||  |||||||||||||    
T  17569588 tgtgttatttaaacaaccatctgagtgataacttttgggacagtcataaatttacaaagagtagtaggtattgat 17569662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 17574024 - 17574098
Alignment:
Q  262 tgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattgat 336  Q
    ||||||||| |||||||||| || ||||||| |||| ||||| ||||||||||| |||||  |||||||||||||    
T  17574024 tgtgttatttaaacaaccatctgagtgataacttttgggacagtcataaatttacaaagagtagtaggtattgat 17574098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 49043503 - 49043441
Alignment:
Q  263 gtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaag 325  Q
    ||||||||  |||||||||||||||||||| ||||   ||||||||||||||| |||||||||    
T  49043503 gtgttatttgaacaaccatttgtgtgataatttttgacacaatcataaatttataaagaaaag 49043441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 37845326 - 37845257
Alignment:
Q  266 ttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    ||||| ||||||  |||||| |||||| || ||  ||||||||||||||| |||||||||||| ||||||    
T  37845326 ttatttaaacaattatttgtatgataacttataaaacaatcataaatttataaagaaaagtagatattga 37845257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 25127719 - 25127795
Alignment:
Q  259 aggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    ||||||||||||  |||||||||||||| || ||||| | |||||| |||||||||| |||||||||||||||||||    
T  25127719 aggtgtgttatttgaacaaccatttgtgcgacaaattctgggacaaccataaatttacaaagaaaagtaggtattga 25127795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 11014160 - 11014106
Alignment:
Q  280 atttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattg 334  Q
    |||||||||| || |||||  ||||||||||||||| |||||||||||| |||||    
T  11014160 atttgtgtgacaatttttaaaacaatcataaatttacaaagaaaagtagatattg 11014106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 3552047 - 3552120
Alignment:
Q  262 tgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    |||||||||  ||||||||||||  |||||| ||||  || ||||||||||||| ||||||||  |||||||||    
T  3552047 tgtgttatttgaacaaccatttggatgataacttttgtgataatcataaatttacaaagaaaataaggtattga 3552120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 17181827 - 17181900
Alignment:
Q  262 tgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    ||||||||| ||||||||||||  || | || ||||| |||||||||||||||| || |||||  |||||||||    
T  17181827 tgtgttatttaaacaaccatttaggtaacaacttttatgacaatcataaatttacaatgaaaaagaggtattga 17181900  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 38249500 - 38249569
Alignment:
Q  264 tgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtatt 333  Q
    |||||||  |||||||||||||||||||| |||| | ||||| ||||||||| |||||||||||||||||    
T  38249500 tgttatttgaacaaccatttgtgtgataattttttgaacaattataaatttataaagaaaagtaggtatt 38249569  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 14255485 - 14255411
Alignment:
Q  259 aggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtatt 333  Q
    ||||||||||||  ||||||||||| || || || |||| |||||| |||||||||| |||||||||||||||||    
T  14255485 aggtgtgttatttgaacaaccatttatgcgacaacttttgggacaaccataaatttacaaagaaaagtaggtatt 14255411  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 42430828 - 42430756
Alignment:
Q  263 gtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    ||||||||  ||||||||||||||||| || |||| | |||| ||||| |||| |||||||||||||||||||    
T  42430828 gtgttatttgaacaaccatttgtgtgacaacttttggaacaaccataagtttacaaagaaaagtaggtattga 42430756  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 4080580 - 4080633
Alignment:
Q  261 gtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaattt 314  Q
    |||||||||| ||| || |||||||||||||| |||||||||||| ||||||||    
T  4080580 gtgtgttatttaaataatcatttgtgtgataatttttaggacaattataaattt 4080633  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 9521969 - 9521913
Alignment:
Q  280 atttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattgat 336  Q
    ||||||||||||| ||||  ||||| |||||||||| |||||||| |||||||||||    
T  9521969 atttgtgtgataacttttgagacaaccataaatttacaaagaaaaataggtattgat 9521913  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 7667291 - 7667228
Alignment:
Q  261 gtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaa 324  Q
    ||||||||||  |||||  |||||||| ||||||||||| |||| |||||||||| ||||||||    
T  7667291 gtgtgttatttgaacaattatttgtgtaataaattttagtacaaccataaatttacaaagaaaa 7667228  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 44050197 - 44050132
Alignment:
Q  259 aggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaa 324  Q
    ||||||||||||  |||||||||||||| || || ||||  ||||| |||||||||| ||||||||    
T  44050197 aggtgtgttatttgaacaaccatttgtgcgacaacttttgagacaaccataaatttacaaagaaaa 44050132  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 17263964 - 17264040
Alignment:
Q  259 aggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    ||||||||||||  |||||  |||||| | |||| |||||| ||||||||||||||  |||||||| || |||||||    
T  17263964 aggtgtgttatttgaacaataatttgtataataatttttagaacaatcataaatttgtaaagaaaattatgtattga 17264040  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 32544195 - 32544143
Alignment:
Q  273 aacaaccatttgtgtgataaattttagg-acaatcataaatttagaaagaaaa 324  Q
    ||||||||||||||||| || ||||||| |||||||||||| || ||||||||    
T  32544195 aacaaccatttgtgtgacaatttttaggaacaatcataaatctaaaaagaaaa 32544143  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 31317321 - 31317395
Alignment:
Q  261 gtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    |||||||||| ||||||| |||||||||| || |||| ||||||||||| ||||| ||||||| |||| ||||||    
T  31317321 gtgtgttatttaaacaacaatttgtgtgacaatttttgggacaatcatagatttacaaagaaatgtagatattga 31317395  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 21433289 - 21433362
Alignment:
Q  259 aggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtat 332  Q
    ||||||||||||  ||||| ||||||||||| || ||| ||||||| |||||||||  ||||||||||||||||    
T  21433289 aggtgtgttatttgaacaatcatttgtgtgacaactttcaggacaaccataaatttgtaaagaaaagtaggtat 21433362  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 29706579 - 29706657
Alignment:
Q  246 taattttataataaggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaa 324  Q
    ||||||| | |||||||||||||||  ||||| ||||| ||||| || ||||| || || |||||||||| ||||||||    
T  29706579 taattttttcataaggtgtgttatttgaacaatcatttctgtgacaacttttaagataaccataaatttacaaagaaaa 29706657  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 6949869 - 6949946
Alignment:
Q  259 aggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattgat 336  Q
    |||||||||||   |||||| |||||||||| || ||||| || ||  ||||||||| |||||||||||| |||||||    
T  6949869 aggtgtgttatctgaacaactatttgtgtgacaacttttacgataaatataaatttataaagaaaagtagatattgat 6949946  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 43367794 - 43367855
Alignment:
Q  263 gtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaa 324  Q
    ||||||||  ||||| ||||||||||| || |||||| |||| |||||||||| ||||||||    
T  43367794 gtgttatttgaacaatcatttgtgtgacaacttttagaacaaccataaatttacaaagaaaa 43367855  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 18395281 - 18395221
Alignment:
Q  263 gtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaa 324  Q
    ||||||||  |||||||||||||| ||||| |||| ||||||||||||||||| ||||||||    
T  18395281 gtgttatttgaacaaccatttgtgagataatttttgggacaatcataaattta-aaagaaaa 18395221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 335
Target Start/End: Complemental strand, 19952184 - 19952106
Alignment:
Q  257 taaggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    ||||||||||||||  || |||||||| ||| | || |||  |||||| |||||||||| |||||||| ||||||||||    
T  19952184 taaggtgtgttatttgaaaaaccatttatgtcacaactttatggacaaccataaatttacaaagaaaattaggtattga 19952106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 335
Target Start/End: Complemental strand, 27546248 - 27546172
Alignment:
Q  259 aggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    ||||||||||||  || ||| |||||||||| || ||||  ||||||||||||| || |||||||| ||| ||||||    
T  27546248 aggtgtgttatttgaataactatttgtgtgacaacttttgagacaatcataaatgtacaaagaaaaatagatattga 27546172  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 32735025 - 32735088
Alignment:
Q  258 aaggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaaga 321  Q
    |||||||||||||  ||||| |||||||| ||||| |||||  ||||||||||||||| |||||    
T  32735025 aaggtgtgttatttgaacaatcatttgtgagataatttttaaaacaatcataaatttacaaaga 32735088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 37754744 - 37754669
Alignment:
Q  259 aggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattg 334  Q
    |||||||||||| |||||||||||||| ||| || |||| | ||||   |||||||| |||||||| |||||||||    
T  37754744 aggtgtgttatttaaacaaccatttgtatgacaacttttggaacaactttaaatttacaaagaaaaataggtattg 37754669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 38585582 - 38585508
Alignment:
Q  261 gtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattga 335  Q
    |||||||||| |||||||||||||||||| || ||||  |||| | ||| ||||| |||||||| || |||||||    
T  38585582 gtgtgttatttaaacaaccatttgtgtgacaatttttgagacagttatatatttataaagaaaaatatgtattga 38585508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 36514453 - 36514530
Alignment:
Q  259 aggtgtgttattcaaacaaccatttgtgtgataaattttaggacaatcataaatttagaaagaaaagtaggtattgat 336  Q
    ||||||||| ||  |||||||||||||||||||| |||| ||| || | ||| |||| ||| |||| |||||||||||    
T  36514453 aggtgtgttgtttgaacaaccatttgtgtgataatttttgggagaaccgtaattttacaaaaaaaaataggtattgat 36514530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 32020371 - 32020415
Alignment:
Q  280 atttgtgtgataaattttaggacaatcataaatttagaaagaaaa 324  Q
    |||| ||||| ||||||| ||||||||||||||||| ||||||||    
T  32020371 atttatgtgacaaattttgggacaatcataaatttataaagaaaa 32020415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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