View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6310_low_7 (Length: 321)
Name: NF6310_low_7
Description: NF6310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6310_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 38886033 - 38886326
Alignment:
| Q |
18 |
agcaaccctttagaagagacaagttcttcttttctcaatcttattatttatttcaactactttaaatatccatctcttaactcaagctatctctctcttt |
117 |
Q |
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| T |
38886033 |
agcaaccctttagaagagacaagttcttcttttctcaatcttattatttatttcaactactttaaatatccatctcttaactcaagctatctctctcttt |
38886132 |
T |
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| Q |
118 |
gtctccctcttttggtttctgtttcatttcttttatacatagaaatggaataagggaggtacataagaaaatgactcagtgtagttaccctgaaaataat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38886133 |
gtctccctcttttggtttctgtttcatttcttttatacatagaaatggaataagggaggtacataagaaaatgactcagtgtagttaccctgaaaataat |
38886232 |
T |
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| Q |
218 |
catagtactatccttatggagagacgcaaagatagcttaatcagaacttgtcctacatgtggtcatcatatcaaatgccaagatcaggttcttc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38886233 |
catagtactatccttatggagagacgcaaagatagcttaatcagaacttgtcctacatgtggtcatcatatcaaatgccaagatcaggttcttc |
38886326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 30504521 - 30504578
Alignment:
| Q |
251 |
agcttaatcagaacttgtcctacatgtggtcatcatatcaaatgccaagatcaggttc |
308 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
30504521 |
agcttaattagaacttgtctcacatgtggtcatcatatcaaaggccaagatcaggttc |
30504578 |
T |
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