View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6311_high_2 (Length: 624)
Name: NF6311_high_2
Description: NF6311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6311_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 11 - 605
Target Start/End: Complemental strand, 10164390 - 10163799
Alignment:
| Q |
11 |
catcatcattcaagaacaaaatttgcattttgctcttccttattccacaagaaattgcaatcatttatcagcaaatagccaatatttcataagtactaat |
110 |
Q |
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| T |
10164390 |
catcatcattcaagaacaaaatttgcattttgctcttccttatttcacaagaaattgcaatcatttatcagcaaatagccaatatttcataagtactaat |
10164291 |
T |
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| Q |
111 |
caacgaatcaaaagtatgcctccaaaggtgtagtcgagtgcaataggttgggatgttgaacaagtattgagagagaggtttaaggttcgattcctactgc |
210 |
Q |
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| T |
10164290 |
caaggaatcaaaagtatgcctccaaaggtgtagtcgagtgcaataggttgggatgttgaacaagtattgagagagaggtttaaggttcgattcctactgc |
10164191 |
T |
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| Q |
211 |
ttataaattcttcgttcaccaacaaactaaccactaacatttgtttataaaagaataaaaaatattagaaagtagagctttgaaattgttactacattga |
310 |
Q |
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| T |
10164190 |
ttacaaattcttcgttcaccaacaaactaaccagtaacatttgtttataaaagaatcaaaaatattagaaag---agctttgaaattgttactacattga |
10164094 |
T |
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| Q |
311 |
atgctatatataatctttaataaaaaactttcatttcatgaattaaccagtacattaagagttgtgaccaaagactactagttaattacaattacaagac |
410 |
Q |
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| T |
10164093 |
atgctatatataatctttaataaaaaactttcatttcatgaattaaccagtacattaagagttgtgaccaaagactactagttaattacaattacaagac |
10163994 |
T |
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| Q |
411 |
ctaacataaacaaaaacaatccccacaattcaaagttcatcaaaccataagatataaagcaatgcataatctttgtatacataattaaatatgcatatag |
510 |
Q |
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| T |
10163993 |
ctaacataaacaaaaacaatccccacaattcaaagttcatcaaaccataagatataaagcaatgcataatctttgtatacataattaaatatgtatatag |
10163894 |
T |
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| Q |
511 |
tgagataataagttaccccatgtacatgtgaattctaatagctaaaaagaaaatacaaactagagcaaaatacaagatggaatgaatgagtatgg |
605 |
Q |
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| T |
10163893 |
tgagataatcatttaccccatgtacatgtggattctaatagctaaaaagaaaatacaaactagagcaaaatacaagatggaatgaatgagtatgg |
10163799 |
T |
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