View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6311_high_4 (Length: 427)
Name: NF6311_high_4
Description: NF6311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6311_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 38864534 - 38864213
Alignment:
| Q |
10 |
gcacagataaaccaaaaaccaaaaacgtgtctgcacacaccagaaaggcgcaacagcaacaaccagagatcgtagaggagaattaacccaaaagttatct |
109 |
Q |
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| T |
38864534 |
gcacatataaaccaaaaaccaaaaacgtgtctgcacacaccagaaaggcacaacagtaacaaccagagatcgtagaggagaatcaacccaaaagttatct |
38864435 |
T |
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| Q |
110 |
cataagacattctttaggattccaacaccattcgtaatacatacacaccggcatcttaatcctatcaaatgtccaccgccacgataaaaccttgatttcc |
209 |
Q |
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| T |
38864434 |
cataagacattctttaggattccaacaccattcgtaatagatacacactgacatcttaatcctatcaaatgtccaccgccacgataaaaccttgatttcc |
38864335 |
T |
|
| Q |
210 |
tcaacaatttctacggcattcgctcnnnnnnnnnntccgattattccgagctcgccaaatctcccaataagtaagtcatgcattgacatgggaaagtgtc |
309 |
Q |
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| T |
38864334 |
tccacaatttctacggcattcgct-aaaaaaaaaatccgattattccgagctcgccaaatctcccaaaaagtaagtcatgcattgacatgggaaagtgtc |
38864236 |
T |
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| Q |
310 |
acgatgatggagttatttgtcca |
332 |
Q |
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| T |
38864235 |
atgatgatggagttatttgtcca |
38864213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 47318618 - 47318703
Alignment:
| Q |
112 |
taagacattctttaggattccaacaccattcgtaatacatacacaccggcatcttaatcctatcaaatgtccaccgccacgataaa |
197 |
Q |
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| T |
47318618 |
taagacattccttcggattccaacaccattcataatacatacaaaccggaatattgatccgattaaatgtccacctccaagataaa |
47318703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 43401447 - 43401365
Alignment:
| Q |
129 |
ttccaacaccattcgtaatacatacacaccggcatcttaatcctatcaaatgtccaccgccacgataaaaccttgatttcctc |
211 |
Q |
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| T |
43401447 |
ttccagcaccattcgtagtacatacaaaccgggatattgatcctattgaacgtccatcgccaagataaaaccttgacttcctc |
43401365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 9284084 - 9284006
Alignment:
| Q |
112 |
taagacattctttaggattccaacaccattcgtaatacatacacaccggcatcttaatcctatcaaatgtccaccgcca |
190 |
Q |
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| T |
9284084 |
taagacattccttaggattccaattccattcataatacatacaaacctgaattttgatcctatcaaatatccaacgcca |
9284006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 16651414 - 16651372
Alignment:
| Q |
112 |
taagacattctttaggattccaacaccattcgtaatacataca |
154 |
Q |
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| T |
16651414 |
taagacattccttaggattgcaacaccattcataatacataca |
16651372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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