View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6311_low_6 (Length: 290)

Name: NF6311_low_6
Description: NF6311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6311_low_6
NF6311_low_6
[»] chr7 (6 HSPs)
chr7 (14-274)||(16722200-16722460)
chr7 (14-274)||(17699214-17699474)
chr7 (17-274)||(17708326-17708583)
chr7 (17-274)||(17718150-17718407)
chr7 (17-274)||(17735980-17736237)
chr7 (17-214)||(17745160-17745357)
[»] chr3 (5 HSPs)
chr3 (23-264)||(46544531-46544772)
chr3 (23-263)||(46539056-46539296)
chr3 (149-259)||(5160459-5160569)
chr3 (233-262)||(5156514-5156543)
chr3 (128-192)||(46498112-46498176)
[»] chr8 (3 HSPs)
chr8 (206-260)||(9692547-9692601)
chr8 (22-124)||(21464155-21464257)
chr8 (207-260)||(9675525-9675578)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 16722200 - 16722460
Alignment:
Q  14 gaacgtgcattctctatttacttttttcttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacgga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16722200 gaacgtgcattctctatttacttttttcttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacgga 16722299  T
Q  114 atcttcctcgtagaaaagtggaagtaggcaagtttagaattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggatt 213  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16722300 atcttcctcgtagaaaagtggaagtaggcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggatt 16722399  T
Q  214 gactttacctttttctatgggaggtttgacaaaaatggtggactctcctatatgtcaagaa 274  Q
    | ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||    
T  16722400 ggctttaccttttactctgggaggtttgacaaaaatggtggactctcctataagtcaagaa 16722460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 17699214 - 17699474
Alignment:
Q  14 gaacgtgcattctctatttacttttttcttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacgga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17699214 gaacgtgcattctctatttacttttttcttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacgga 17699313  T
Q  114 atcttcctcgtagaaaagtggaagtaggcaagtttagaattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggatt 213  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17699314 atcttcctcgtagaaaagtggaagtaggcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggatt 17699413  T
Q  214 gactttacctttttctatgggaggtttgacaaaaatggtggactctcctatatgtcaagaa 274  Q
    | ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||    
T  17699414 ggctttaccttttactctgggaggtttgacaaaaatggtggactctcctataagtcaagaa 17699474  T

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Target: chr7; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 17708326 - 17708583
Alignment:
Q  17 cgtgcattctctatttacttttttcttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacggaatc 116  Q
    ||||||||||| ||||||||||||||||| ||   ||||||||||||||||  |||||||||||  ||||||||| ||||||||||||||||||  ||||    
T  17708326 cgtgcattctccatttacttttttcttcccgatgcaaaagatgggttgtcagctttgattgatacggtagcttctaattctgagtttttggaacacaatc 17708425  T
Q  117 ttcctcgtagaaaagtggaagtaggcaagtttagaattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgac 216  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  17708426 ttcctcgtagaaaagtggaagtaggcaagttcaggattccaagattcaatatttcttttaagattgaagcttctaagttactaaagaaattaggattgac 17708525  T
Q  217 tttacctttttctatgggaggtttgacaaaaatggtggactctcctatatgtcaagaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17708526 tttacctttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaa 17708583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 17718150 - 17718407
Alignment:
Q  17 cgtgcattctctatttacttttttcttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacggaatc 116  Q
    ||||||||||| ||||||||||||||||| ||   |||||||||||||||   |||||||||||| ||| ||||||||| ||||||||||||||  ||||    
T  17718150 cgtgcattctccatttacttttttcttcccgatgcaaaagatgggttgtccgctttgattgataatgtaacttctgattatgagtttttggaacacaatc 17718249  T
Q  117 ttcctcgtagaaaagtggaagtaggcaagtttagaattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgac 216  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17718250 ttcctcgtagaaaagtggaagtaggcaagttcaggattccaagattcaatatttcttttgagattgaagctcctgagttactaaagaaattaggattgac 17718349  T
Q  217 tttacctttttctatgggaggtttgacaaaaatggtggactctcctatatgtcaagaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17718350 tttacctttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaa 17718407  T

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Target: chr7; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 17735980 - 17736237
Alignment:
Q  17 cgtgcattctctatttacttttttcttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacggaatc 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||| |    
T  17735980 cgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttgattgataaagtagcttctgattctgagtttttggaacagaaac 17736079  T
Q  117 ttcctcgtagaaaagtggaagtaggcaagtttagaattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgac 216  Q
    |||||||||   ||||  ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  17736080 ttcctcgtaatcaagtcaaagtaggcaagttcatgattccaagattcaatatttcttttgagattgaagcttctgagttattaaataaattaggattgac 17736179  T
Q  217 tttacctttttctatgggaggtttgacaaaaatggtggactctcctatatgtcaagaa 274  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  17736180 tttacctttttcgaagggaggtttgacaaaaatggtggactctcctataagtcaagaa 17736237  T

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Target: chr7; HSP #6
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 17745160 - 17745357
Alignment:
Q  17 cgtgcattctctatttacttttttcttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacggaatc 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| ||| |    
T  17745160 cgtgcattctctatttacttttttcttcctgacgaaaaagatggtttgtcagctttgattgataaagtagcttctgattctgagtttttggaacagaaac 17745259  T
Q  117 ttcctcgtagaaaagtggaagtaggcaagtttagaattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattg 214  Q
    ||||||||  | ||||  ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17745260 ttcctcgtgaagaagtccaagtaggcaagttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattg 17745357  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 46544531 - 46544772
Alignment:
Q  23 ttctctatttacttttttcttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacggaatcttcctc 122  Q
    ||||||||||||||||||||||||||   |||||||||||||| |  ||||| ||| || ||||||||||| ||||||||| | ||||  |  | ||||     
T  46544531 ttctctatttacttttttcttcctgatgcaaaagatgggttgttagctttgactgaaaaggtagcttctgaatctgagtttctagaacatacacgtccta 46544630  T
Q  123 gtagaaa-agtggaagtaggcaagtttagaattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttac 221  Q
    | ||||| ||||  ||||||  | || |||||||| | |||||||||| |||||| | ||||| ||||||   | || ||| |  ||||| ||  |||||    
T  46544631 g-agaaacagtgatagtaggtgacttaagaattccgaaattcaatattgcttttgggcttgaaacttctggcgtgctgaaggagctaggagtggttttac 46544729  T
Q  222 ctttttctatgggaggtttgacaaaaatggtggactctcctat 264  Q
    |||| ||||  |||||||||||||| |||||||||||||||||    
T  46544730 ctttctctacaggaggtttgacaaatatggtggactctcctat 46544772  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 46539056 - 46539296
Alignment:
Q  23 ttctctatttacttttttcttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacggaatcttcctc 122  Q
    |||||||| |||||||||||||||||   |||||||||||||| |  |||||  || || ||||||||||| ||||| ||| ||||||| |    ||||     
T  46539056 ttctctatgtacttttttcttcctgatgcaaaagatgggttgttagctttgaccgaaaaggtagcttctgaatctgaatttctggaacgtacgtgtccta 46539155  T
Q  123 gtagaaaagtggaagtaggcaagtttagaattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttacc 222  Q
        || ||||  ||||||  | || ||||||||||||||||| |||||||||||| ||||| ||||| |  | || ||| |  ||||| ||  ||||||    
T  46539156 aacaaacagtgcgagtaggtgacttcagaattccaagattcaaaatttcttttgagcttgaaacttctaatatgcttaaggagctaggaatggttttacc 46539255  T
Q  223 tttttctatgggaggtttgacaaaaatggtggactctccta 263  Q
    ||| |||   |||||||||||||||||||||||||||||||    
T  46539256 tttctctcaaggaggtttgacaaaaatggtggactctccta 46539296  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 259
Target Start/End: Original strand, 5160459 - 5160569
Alignment:
Q  149 agaattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattgactttacctttttctatgggaggtttgacaaaaa 248  Q
    ||||||||||||||||| ||||| |||||| ||||| |||||||  | || ||| | |||||| |||||||||||||  ||   | ||||||||||||||    
T  5160459 agaattccaagattcaaaatttcatttgagcttgaaacttctgatatgctgaaggagttaggagtgactttacctttcactcgtgaaggtttgacaaaaa 5160558  T
Q  249 tggtggactct 259  Q
    |||||||||||    
T  5160559 tggtggactct 5160569  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 5156514 - 5156543
Alignment:
Q  233 ggaggtttgacaaaaatggtggactctcct 262  Q
    ||||||||||||||||||||||||||||||    
T  5156514 ggaggtttgacaaaaatggtggactctcct 5156543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 46498112 - 46498176
Alignment:
Q  128 aaagtggaagtaggcaagtttagaattccaagattcaatatttcttttgagattgaagcttctga 192  Q
    ||||||||||||||  | ||||| |||||||| ||||||||||| |||||  ||||| |||||||    
T  46498112 aaagtggaagtaggtgactttaggattccaaggttcaatatttcatttgaacttgaaacttctga 46498176  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 9692601 - 9692547
Alignment:
Q  206 ttaggattgactttacctttttctatgggaggtttgacaaaaatggtggactctc 260  Q
    |||||| ||| ||||||||| |||   ||||||||||||||||||||||||||||    
T  9692601 ttaggagtgagtttacctttctcttctggaggtttgacaaaaatggtggactctc 9692547  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 21464257 - 21464155
Alignment:
Q  22 attctctatttacttttttcttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacggaatcttcct 121  Q
    |||||| ||||||||||||||||||||   ||||||||| |||| |  ||||||| | || || ||||| || ||| ||||||||||||  || ||||||    
T  21464257 attctcaatttacttttttcttcctgatgcaaaagatggattgttagctttgattaagaaggttgcttccgaatctaagtttttggaacaaaagcttcct 21464158  T
Q  122 cgt 124  Q
    |||    
T  21464157 cgt 21464155  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 9675578 - 9675525
Alignment:
Q  207 taggattgactttacctttttctatgggaggtttgacaaaaatggtggactctc 260  Q
    ||||| ||| ||||||||| |||   ||||||||||||||||||||||||||||    
T  9675578 taggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctc 9675525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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