View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6313_high_3 (Length: 274)

Name: NF6313_high_3
Description: NF6313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6313_high_3
NF6313_high_3
[»] chr1 (5 HSPs)
chr1 (12-241)||(13379434-13379660)
chr1 (18-231)||(51442845-51443039)
chr1 (12-110)||(24302420-24302518)
chr1 (132-227)||(24302522-24302613)
chr1 (212-241)||(51443160-51443189)
[»] chr4 (6 HSPs)
chr4 (12-241)||(10335421-10335647)
chr4 (12-210)||(41951463-41951659)
chr4 (37-241)||(18286115-18286313)
chr4 (51-241)||(41942480-41942667)
chr4 (124-226)||(31518548-31518649)
chr4 (213-241)||(41951635-41951663)
[»] chr8 (7 HSPs)
chr8 (12-241)||(21231226-21231453)
chr8 (12-229)||(42076878-42077092)
chr8 (12-241)||(9884303-9884525)
chr8 (12-241)||(9817586-9817808)
chr8 (126-175)||(24423776-24423825)
chr8 (124-172)||(24499436-24499484)
chr8 (141-177)||(29115135-29115171)
[»] chr3 (11 HSPs)
chr3 (13-241)||(40887982-40888205)
chr3 (12-179)||(29454273-29454439)
chr3 (12-240)||(52640692-52640913)
chr3 (12-241)||(15989760-15989982)
chr3 (12-241)||(8655604-8655819)
chr3 (12-179)||(19544006-19544165)
chr3 (124-169)||(3415563-3415608)
chr3 (157-241)||(52640860-52640941)
chr3 (179-229)||(40888170-40888219)
chr3 (118-175)||(11649936-11649993)
chr3 (124-172)||(10051160-10051208)
[»] scaffold0022 (1 HSPs)
scaffold0022 (12-241)||(2577-2802)
[»] chr7 (7 HSPs)
chr7 (13-241)||(8312293-8312520)
chr7 (12-229)||(13169975-13170187)
chr7 (12-241)||(9745763-9745988)
chr7 (187-241)||(13169989-13170043)
chr7 (118-177)||(46002215-46002274)
chr7 (16-76)||(31211784-31211843)
chr7 (124-172)||(65494-65542)
[»] chr2 (6 HSPs)
chr2 (12-241)||(22404370-22404592)
chr2 (12-225)||(27976501-27976713)
chr2 (12-225)||(28063029-28063241)
chr2 (12-241)||(29045845-29046066)
chr2 (12-241)||(16329476-16329698)
chr2 (38-179)||(16130465-16130607)
[»] scaffold0016 (1 HSPs)
scaffold0016 (12-241)||(108443-108664)
[»] scaffold0028 (1 HSPs)
scaffold0028 (38-179)||(147856-147993)
[»] scaffold0150 (1 HSPs)
scaffold0150 (38-179)||(35224-35361)
[»] chr6 (2 HSPs)
chr6 (124-172)||(22625553-22625601)
chr6 (124-172)||(29955032-29955080)
[»] chr5 (1 HSPs)
chr5 (124-172)||(31094964-31095012)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 13379434 - 13379660
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    ||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||     
T  13379434 catcatcaaggaattgtgctaaaatcatttctttttagtttaaaatattcatcactataaaacatgctataagaacaaacacaagacccaaaactcaatg 13379533  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaa 211  Q
    |||| |||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||   |  |||||| |||| |||||||||||||||    
T  13379534 ttgatgatgcagatgcatgaaatgcaaatagaccatgatccggatatcgccccaattggcataatag---ttttaatcgtcccatttgacatataataaa 13379630  T
Q  212 gaatcgccccatttggcatataataataat 241  Q
    |||||| |||||||| ||||||||||||||    
T  13379631 gaatcgtcccatttgtcatataataataat 13379660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 51442845 - 51443039
Alignment:
Q  18 caaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaatattgagg 117  Q
    |||||||||||||||||| | ||||||| ||| | ||||||||||||||| |||||||| | |||| ||||||||||||       ||||         |    
T  51442845 caaggaattgtgctaaaaca-tttctttctaattcaaaatattcatcactttaaaatataccataaaaacaaacacaag-------actc--------tg 51442928  T
Q  118 atgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaagaatcg 217  Q
    ||||| |||||||||||||||| |||  ||||| ||||||||| ||||||||||||||||||  ||  |||||||||| ||| |||||||||||||||||    
T  51442929 atgcagatgcatgaaatgcaaatagatcatgattcggatatcgtcccaattggcataatagt-tta--aatcgccccaattggcatataataaagaatcg 51443025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 24302420 - 24302518
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaa-caaacacaagaccaaaaactcaat 110  Q
    |||||||| ||||||||| ||||| | |||| |||||  ||||||| |||||||||||||||||| |||||||||  |||||||||||| || |||||||    
T  24302420 catcatcatggaattgtgttaaaaca-tttcgttttagtttaaaatgttcatcactctaaaatatactataagaagaaaacacaagacccaagactcaat 24302518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 24302522 - 24302613
Alignment:
Q  132 aatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaagaatcgccccatttgg 227  Q
    |||||||| |||| |||||  |||||||| |||||||||||||||||   |  ||||| ||||| |||||||||||| || ||||||| |||||||    
T  24302522 aatgcaaatagaccatgatttggatatcgtcccaattggcataatag---ttttaatcaccccatttgacatataat-aataatcgcctcatttgg 24302613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 51443160 - 51443189
Alignment:
Q  212 gaatcgccccatttggcatataataataat 241  Q
    ||||||||||||||||||||||||||||||    
T  51443160 gaatcgccccatttggcatataataataat 51443189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 10335421 - 10335647
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  10335421 catcatcaaggaattgtgctaaaataatttctttttagtttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaagactcaatg 10335520  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaa 211  Q
    |||| |||||||||| |||||||| |||||||| ||||| | ||||||||||||| |  ||||||||   |  ||||| ||||| ||| |||||||||||    
T  10335521 ttgatgatgcaaatgtatgaaatgtaaacagaccatgattcagatatcgccccaactttcataatag---ttttaatcaccccatttggcatataataaa 10335617  T
Q  212 gaatcgccccatttggcatataataataat 241  Q
    |||| |||||||||||||||||||||||||    
T  10335618 gaattgccccatttggcatataataataat 10335647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 41951463 - 41951659
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgct-ataagaacaaacacaagaccaaaaactcaat 110  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  41951463 catcatcaaggaattgtgctaaaataatttctttttagtttaaaatattcgtcactctaaaatatgcttataagaacaaacacaagaccaaagactcaat 41951562  T
Q  111 attgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataa 210  Q
     |||| |||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||   |  ||||||||||| ||| ||||||||||    
T  41951563 gttgatgatgcaaatgcatgaaatgcaaacagaccatgattcggatatcgtctcaattggcataatag---ttttaatcgccccatttggcatataataa 41951659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 18286115 - 18286313
Alignment:
Q  37 aatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaatattgaggatgcaaatgcatgaaatgc 136  Q
    ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||   | ||||||| ||   ||||||||||||| ||||||    
T  18286115 aatttctttttaatttaaaatattcatcactctaaaatatactacaagaacaaacacaagactcgagactcaatgtt---gatgcaaatgcataaaatgc 18286211  T
Q  137 aaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaagaatcgccccatttggcatataata 236  Q
    ||| |||  |||||||||||||||||||||||| ||||||||   |  ||||||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  18286212 aaatagagcatgatccggatatcgccccaattgacataatag---ttttaatcgccccttttggcatataataaagaatcgccccatttggcatataata 18286308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 41942480 - 41942667
Alignment:
Q  51 ttaaaatattcatcactctaaaatatgct-ataagaacaaacacaagaccaaaaactcaatattgaggatgcaaatgcatgaaatgcaaacagactatga 149  Q
    ||||||||||  ||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||| ||||    
T  41942480 ttaaaatatttgtcactctaaaatatgcttataagaacaaacagaagaccaaacactcaatgttgatgatgcaaatgcatgaaatgcaaacagaccatga 41942579  T
Q  150 tccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaagaatcgccccatttggcatataataataat 241  Q
    ||||||||||||| |||||||||||||||   |  ||||||||||| ||| |||||||| || ||||| ||||||||||| |||||||||||    
T  41942580 tccggatatcgcctcaattggcataatag---ttttaatcgccccatttggcatataat-aataatcgtcccatttggcacataataataat 41942667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 31518548 - 31518649
Alignment:
Q  124 atgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaagaatcgccccat 223  Q
    |||||||||||||||  |||| |||||||||||||||||| | |||||||||| ||  |  ||||||||||| ||| |||| ||||| ||||||||||||    
T  31518548 atgcatgaaatgcaagtagaccatgatccggatatcgccctagttggcataattgt-tttttaatcgccccagttggcatacaataatgaatcgccccat 31518646  T
Q  224 ttg 226  Q
    |||    
T  31518647 ttg 31518649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 241
Target Start/End: Original strand, 41951635 - 41951663
Alignment:
Q  213 aatcgccccatttggcatataataataat 241  Q
    |||||||||||||||||||||||||||||    
T  41951635 aatcgccccatttggcatataataataat 41951663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 21231226 - 21231453
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaactt-aaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaat 110  Q
    |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||    
T  21231226 catcatcaaggaattgtgctaaaataatttcttttttagtttaaaatattcatcactctaaaatatgctataagaactaacacaagaccaaagcctcaat 21231325  T
Q  111 attgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataa 210  Q
     |||| ||||||||| ||||||||||||| |||  |||||||||||||||||||||||||||||||||   |  |||||| |||| ||| ||||||||||    
T  21231326 gttgatgatgcaaatccatgaaatgcaaatagatcatgatccggatatcgccccaattggcataatag---ttttaatcgtcccatttggcatataataa 21231422  T
Q  211 agaatcgccccatttggcatataataataat 241  Q
    | |||| || |||||||||||| ||||||||    
T  21231423 aaaatcacctcatttggcatatgataataat 21231453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 42076878 - 42077092
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgct-ataagaacaaacacaagaccaaaaactcaat 110  Q
    ||||||||||||||||||||| |||||||||||||||  ||||||||||  ||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  42076878 catcatcaaggaattgtgctataataatttctttttagtttaaaatatttgtcactctaaaatatgcttataagaacaaacacaagaccaaagactcaat 42076977  T
Q  111 attgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataa 210  Q
     |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   |  |||||| |||| ||| |||||||| |    
T  42076978 gttgatgatgcaaatgcatgaaatgcaaacagaccatgatccggatatcgccccaattggcataatag---ttttaatcgtcccatttggcatataat-a 42077073  T
Q  211 agaatcgccccatttggca 229  Q
    | |||||||||||||||||    
T  42077074 ataatcgccccatttggca 42077092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 9884525 - 9884303
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    |||||||||||||||||||||||| | ||||||||||  | |||||||||||||| ||||||||| |||||||||||| ||||| ||| || |||||||     
T  9884525 catcatcaaggaattgtgctaaaaca-tttctttttagttcaaaatattcatcacactaaaatatactataagaacaagcacaaaacccaagactcaatg 9884427  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaa 211  Q
    ||||   |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||   |  |||||| |||| ||||||||||||||     
T  9884426 ttga---tgcagatgcatgaaatgcaaatagaccatgatccggatatcgccccaattggcataatag---ttttaatcgtcccatttgacatataataag 9884333  T
Q  212 gaatcgccccatttggcatataataataat 241  Q
    ||||||||| ||||||||||||||||||||    
T  9884332 gaatcgcccaatttggcatataataataat 9884303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 9817586 - 9817808
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    |||||||||||||||||||||||| | ||||||||||  | ||||||||||||||| ||||||||   |||||||||||||||||||  || | |||||     
T  9817586 catcatcaaggaattgtgctaaaaca-tttctttttagttcaaaatattcatcactttaaaatataacataagaacaaacacaagactcaagattcaatg 9817684  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaa 211  Q
    ||   |||||| |||||||||||||||| |||  |||||||||||||||||||||||| ||||||||   |  ||||||||||| ||| |||||||||||    
T  9817685 tt---gatgcagatgcatgaaatgcaaatagatcatgatccggatatcgccccaattgacataatag---ttttaatcgccccatttggcatataataaa 9817778  T
Q  212 gaatcgccccatttggcatataataataat 241  Q
    ||||||||||||||||||||||||||||||    
T  9817779 gaatcgccccatttggcatataataataat 9817808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 24423825 - 24423776
Alignment:
Q  126 gcatgaaatgcaaacagactatgatccggatatcgccccaattggcataa 175  Q
    |||||||||||||  | || |||||||||||||||||||| |||||||||    
T  24423825 gcatgaaatgcaactataccatgatccggatatcgccccatttggcataa 24423776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 24499436 - 24499484
Alignment:
Q  124 atgcatgaaatgcaaacagactatgatccggatatcgccccaattggca 172  Q
    |||||||| ||||||   ||| |||||||||||||||||||||||||||    
T  24499436 atgcatgagatgcaacttgaccatgatccggatatcgccccaattggca 24499484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 29115135 - 29115171
Alignment:
Q  141 agactatgatccggatatcgccccaattggcataata 177  Q
    |||| |||||||||||||||||||||||| |||||||    
T  29115135 agaccatgatccggatatcgccccaattgacataata 29115171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 40887982 - 40888205
Alignment:
Q  13 atcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaatat 112  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||| |||||| ||||| |||||||||||||||||||||||||  ||||||||| |    
T  40887982 atcatcaaggaattgtgctaaaataatttctttttagtttaaaatattgatcactataaaacatgctataagaacaaacacaagacc-caaactcaatgt 40888080  T
Q  113 tgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaag 212  Q
    ||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||   |  |||||||| || |||||||||||| ||     
T  40888081 tggagatgcagatgcatgaaatgcaaacagaccatgatccggatatcgccccaattggcataatag---ttttaatcgcctcatttgacatataat-aat 40888176  T
Q  213 aatcgccccatttggcatataataataat 241  Q
    |||||||||||||| || |||||||||||    
T  40888177 aatcgccccatttgacacataataataat 40888205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 29454439 - 29454273
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    ||||||||||||||||||||||||||| || ||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||     
T  29454439 catcatcaaggaattgtgctaaaataaattatttttagtttaaaatattcatccctctaaaatatgctataagaacaaacacaagaccaaagactcaatg 29454340  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagt 179  Q
    |||| |||||||||||||||||||| || |||| |||||||| ||||||||||||||| |||||||||    
T  29454339 ttgatgatgcaaatgcatgaaatgc-aatagaccatgatccgcatatcgccccaattgacataatagt 29454273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 52640692 - 52640913
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    |||||||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||| | |  ||||||||||||||||  |  |||||||     
T  52640692 catcatcaaggaattgtgctaaaaca-tttctttctaatttaaaatattcatcactctaaaatatacaactagaacaaacacaagactcaggactcaatg 52640790  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaa 211  Q
    ||   ||||||||||||||||||||||| | || ||||| | |||||||||||| |||||||||   || |  ||||||||||| ||||||||||||||     
T  52640791 tt---gatgcaaatgcatgaaatgcaaatataccatgattcagatatcgccccagttggcataa---tatttttaatcgccccaattgacatataataat 52640884  T
Q  212 gaatcgccccatttggcatataataataa 240  Q
    |||||||||||||||||||||||||||||    
T  52640885 gaatcgccccatttggcatataataataa 52640913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 15989760 - 15989982
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    |||||||||||||||||||||||| | ||||||| ||  |||||||||||||||||||||||||| ||| |||||||||||||||||       |||||     
T  15989760 catcatcaaggaattgtgctaaaaca-tttctttatagtttaaaatattcatcactctaaaatatactacaagaacaaacacaagac-------tcaatg 15989851  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaac-----agactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatata 206  Q
    ||||   |||| ||||||| |||||||       |||| |||||||||||||||||||| |||||||||||||  |  ||||||||||| ||| ||||||    
T  15989852 ttga---tgcagatgcatggaatgcaatgcaagtagaccatgatccggatatcgccccagttggcataatagttttt-taatcgccccagttggcatata 15989947  T
Q  207 ataaagaatcgccccatttggcatataataataat 241  Q
    |||| ||||||||||||||||||||||||||||||    
T  15989948 ataatgaatcgccccatttggcatataataataat 15989982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 8655819 - 8655604
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    ||||||||||||||| |||||||| | ||||||||||| |||||||||| |||||||||||||||  ||||||||||||||||||| | ||||||||||     
T  8655819 catcatcaaggaattatgctaaaaca-tttctttttaatttaaaatatttatcactctaaaatataatataagaacaaacacaagatcgaaaactcaatg 8655721  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaa 211  Q
    |||         |||||||||||||||  |||| || ||||| |||||  | |||||| ||||||||   |  ||||||||||| ||||||||||||||     
T  8655720 ttg---------atgcatgaaatgcaagtagaccattatccgaatatc-actcaattgacataatag---ttttaatcgccccatttgacatataataat 8655634  T
Q  212 gaatcgccccatttggcatataataataat 241  Q
    ||||| ||||||||||||||||||||||||    
T  8655633 gaatcaccccatttggcatataataataat 8655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 19544006 - 19544165
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    |||||||||||||||||||||||  | |||   ||||  || ||||||||||||||||||| |||  ||||||||||||||||||||| || |||||||     
T  19544006 catcatcaaggaattgtgctaaagcatttt---tttagttttaaatattcatcactctaaa-tatattataagaacaaacacaagacccaatactcaatg 19544101  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagt 179  Q
    || |   |||| |||||||||||| ||  |||| ||||||||||||||||||||||||||||||||||    
T  19544102 ttaa---tgcagatgcatgaaatgaaagtagac-atgatccggatatcgccccaattggcataatagt 19544165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 3415563 - 3415608
Alignment:
Q  124 atgcatgaaatgcaaacagactatgatccggatatcgccccaattg 169  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||    
T  3415563 atgcatgaaatgcaactagactatgatccggatatcgctccaattg 3415608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 52640860 - 52640941
Alignment:
Q  157 atcgccccaattggcataatagtaataat-aatcgccccacttgacatataataaagaatcgccccatttggcatataataataat 241  Q
    ||||||||||||| ||||    ||||||| |||||||||| ||| ||||||||||  ||||| |||||||| ||||||||||||||    
T  52640860 atcgccccaattgacata----taataatgaatcgccccatttggcatataataataaatcgtcccatttgacatataataataat 52640941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 40888170 - 40888219
Alignment:
Q  179 taataataatcgccccacttgacatataataaagaatcgccccatttggca 229  Q
    ||||||||||||||||| |||||| |||||||  |||||||||||||||||    
T  40888170 taataataatcgccccatttgacacataataat-aatcgccccatttggca 40888219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 11649936 - 11649993
Alignment:
Q  118 atgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataa 175  Q
    ||||| |||||||||||| ||  |||| ||||||| |||||| |||||||||||||||    
T  11649936 atgcagatgcatgaaatgtaactagaccatgatccagatatcaccccaattggcataa 11649993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 10051208 - 10051160
Alignment:
Q  124 atgcatgaaatgcaaacagactatgatccggatatcgccccaattggca 172  Q
    |||||||| ||||||   ||| |||||||||||||||||||||||||||    
T  10051208 atgcatgagatgcaacttgaccatgatccggatatcgccccaattggca 10051160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 2802 - 2577
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    ||||||||| |||||||| ||||| | ||||||||||  | ||||||||||||||| |||||||| | ||||||||||||||||||||||| |||||||     
T  2802 catcatcaatgaattgtgttaaaaca-tttctttttagttcaaaatattcatcactttaaaatataccataagaacaaacacaagaccaaagactcaatg 2704  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaa 211  Q
    |||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||   |  ||||| ||||| ||| | |||||||||    
T  2703 ttgatgatgcaaatgcatgaaatgcaaatagaccatgatccggatatcgccccaattgacataatag---ttttaatcaccccatttggcgtataataaa 2607  T
Q  212 gaatcgccccatttggcatataataataat 241  Q
    ||||||||||||||||||||||||||||||    
T  2606 gaatcgccccatttggcatataataataat 2577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 8312520 - 8312293
Alignment:
Q  13 atcatcaaggaatt--gtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaat 110  Q
    ||||||||||||||  |||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  8312520 atcatcaaggaattatgtgctaaaatcatttctttttagtttaaaatattcatcactctaaaatatgctataagaacaaacacaagacccaagactcaat 8312421  T
Q  111 attgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataa 210  Q
     |||| |||||| |||||| ||||| ||| |||| ||||| |||||||| ||||||||||||||| ||   |  ||||| || || ||| ||||||||||    
T  8312420 gttgatgatgcagatgcattaaatgtaaatagaccatgattcggatatctccccaattggcataagag---ttttaatcaccacatttggcatataataa 8312324  T
Q  211 agaatcgccccatttggcatataataataat 241  Q
    ||||||| |||||||| ||||||||||||||    
T  8312323 agaatcgtcccatttgacatataataataat 8312293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 13170187 - 13169975
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    |||| ||||||||||||||||||| | ||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||||  || |||||||     
T  13170187 catcgtcaaggaattgtgctaaaaca-tttctttttaatttaaaaaattcatcactctaaaatatactacaagaacaaacacaagactcaatactcaatg 13170089  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaa 211  Q
    |||| |||||| ||||||||||||| || ||||| ||||||||||||||||||| |||||||| || |||  | |||||||||| ||| ||||||||||     
T  13170088 ttgatgatgcagatgcatgaaatgctaatagactgtgatccggatatcgccccatttggcata-taataa--agaatcgccccatttggcatataataat 13169992  T
Q  212 gaatcgccccatttggca 229  Q
     |||||||||||||||||    
T  13169991 -aatcgccccatttggca 13169975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 9745988 - 9745763
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    |||||||||||||||||| ||||| | |||||||   | || |||  ||||||||||||||||||  ||||||||||||||||||||| || |||||||     
T  9745988 catcatcaaggaattgtgttaaaaca-tttcttt---agttcaaaagttcatcactctaaaatatattataagaacaaacacaagacccaagactcaatg 9745893  T
Q  112 ttgagg---atgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataat 208  Q
    |||| |   ||||| |||||||||||||||| |||| |||||| |||||||||| |||||| ||||||||   |  ||||||||||| ||| |||||| |    
T  9745892 ttgatgtagatgcagatgcatgaaatgcaaatagaccatgatctggatatcgcctcaattgacataatag---ttttaatcgccccatttggcatatact 9745796  T
Q  209 aaagaatcgccccatttggcatataataataat 241  Q
    ||||||||||||||||| |||||| ||||||||    
T  9745795 aaagaatcgccccatttagcatatgataataat 9745763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 13170043 - 13169989
Alignment:
Q  187 atcgccccacttgacatataataaagaatcgccccatttggcatataataataat 241  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  13170043 atcgccccatttggcatataataaagaatcgccccatttggcatataataataat 13169989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 46002215 - 46002274
Alignment:
Q  118 atgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataata 177  Q
    ||||| |||||||||||||||  |||| ||||||  ||||||||||||||||||||||||    
T  46002215 atgcagatgcatgaaatgcaactagaccatgatctagatatcgccccaattggcataata 46002274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 31211843 - 31211784
Alignment:
Q  16 atcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatat 76  Q
    |||||||||||||||||| | | ||||||||||  |||||||||||||||||| |||||||    
T  31211843 atcaaggaattgtgctaagaca-tttctttttagtttaaaatattcatcactccaaaatat 31211784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 65542 - 65494
Alignment:
Q  124 atgcatgaaatgcaaacagactatgatccggatatcgccccaattggca 172  Q
    |||||||| ||||||   ||| |||||||||||||||||||||||||||    
T  65542 atgcatgagatgcaacttgaccatgatccggatatcgccccaattggca 65494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 22404592 - 22404370
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    ||||||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||  || |||||||     
T  22404592 catcatcaaggaactgtgctaaaaca-tttctttttaatttaaaatattcatcactctaaaatatactacaagaacaaacacaagactcaagactcaatg 22404494  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaa 211  Q
    ||||   ||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||   |  |||||| |||  ||| |||||||||||    
T  22404493 ttga---tgcaaatgcatgaaatgcaaatagagcatgatccggatatcgccccaattggcataatag---ttttaatcgtcccttttggcatataataaa 22404400  T
Q  212 gaatcgccccatttggcatataataataat 241  Q
    ||||||| ||||||| ||||||||||||||    
T  22404399 gaatcgctccatttgacatataataataat 22404370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 27976501 - 27976713
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||     
T  27976501 catcatcaaggaattgtgctaaaataatttctttt-agtttaaaatattcatcactctaaaatatgctataagaacaaacacaatactaaatactcaatg 27976599  T
Q  112 t---tgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataat 208  Q
    |   ||| ||||||||||||||||||||||| |||  ||||||| |||||||||||||||||||||||||   |  |||||| |||| || || ||||||    
T  27976600 ttgatgatgatgcaaatgcatgaaatgcaaatagatcatgatccagatatcgccccaattggcataatag---ttttaatcgacccatttaacttataat 27976696  T
Q  209 aaagaatcgccccattt 225  Q
    |||||||| ||||||||    
T  27976697 aaagaatcaccccattt 27976713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 28063029 - 28063241
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||     
T  28063029 catcatcaaggaattgtgctaaaataatttctttt-agtttaaaatattcatcactctaaaatatgctataagaacaaacacaatactaaatactcaatg 28063127  T
Q  112 t---tgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataat 208  Q
    |   ||| ||||||||||||||||||||||| |||  ||||||| |||||||||||||||||||||||||   |  |||||| |||| || || ||||||    
T  28063128 ttgatgatgatgcaaatgcatgaaatgcaaatagatcatgatccagatatcgccccaattggcataatag---ttttaatcgacccatttaacttataat 28063224  T
Q  209 aaagaatcgccccattt 225  Q
    |||||||| ||||||||    
T  28063225 aaagaatcaccccattt 28063241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 29045845 - 29046066
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    ||||||||| |||||||||||||| | ||||||||||| | |||||||| |||||| |||||||| | |||||||||||||||||||  || | |||||     
T  29045845 catcatcaaagaattgtgctaaaaca-tttctttttaattcaaaatattaatcactttaaaatataccataagaacaaacacaagactcaagattcaatg 29045943  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaa 211  Q
    ||   |||||| ||||||| |||||||| |||  |||||||||||||||||||||||||||||||||   |  ||||||||||| ||| |||||||||||    
T  29045944 tt---gatgcagatgcatg-aatgcaaatagatcatgatccggatatcgccccaattggcataatag---ttttaatcgccccatttggcatataataaa 29046036  T
Q  212 gaatcgccccatttggcatataataataat 241  Q
    ||||||||||||||| ||||||||||||||    
T  29046037 gaatcgccccatttgacatataataataat 29046066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 16329698 - 16329476
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    ||||||| |||| | ||||||| ||| ||||||||||| ||||| ||||||| |||||||||||| ||| |||||||||||||| ||  || |||||||     
T  16329698 catcatctaggagtcgtgctaagata-tttctttttaatttaaactattcattactctaaaatatactaaaagaacaaacacaatactcaagactcaatg 16329600  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaa 211  Q
    ||||   |||| |||||||||||||||| |||| ||||||||||||||||||||| | |||||||||   |  ||||| ||||| ||| |||||| ||||    
T  16329599 ttga---tgcagatgcatgaaatgcaaatagaccatgatccggatatcgccccaactagcataatag---ttttaatcaccccatttggcatatattaaa 16329506  T
Q  212 gaatcgccccatttggcatataataataat 241  Q
    ||||||||||||||||||||| ||||||||    
T  16329505 gaatcgccccatttggcatatgataataat 16329476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 16130465 - 16130607
Alignment:
Q  38 atttctttttaacttaaaatattcatcactctaaaatatgcta----taagaacaaacacaagaccaaaaactcaatattgaggatgcaaatgcatgaaa 133  Q
    ||||||||| || ||||||||||||| |||||||||||| |||    ||||||||||||||| ||  || ||||||| ||||   |||| ||||||||||    
T  16130465 atttcttttaaatttaaaatattcattactctaaaatatactaaaattaagaacaaacacaatacttaagactcaatgttga---tgcagatgcatgaaa 16130561  T
Q  134 tgcaaacagactatgatccggatatcgccccaattggcataatagt 179  Q
    |||||| |||| ||||||| |||||||| |||| ||||||||||||    
T  16130562 tgcaaatagaccatgatccagatatcgctccaactggcataatagt 16130607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 108664 - 108443
Alignment:
Q  12 catcatcaaggaattgtgctaaaataatttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaata 111  Q
    |||||||||||||||||||||||| | ||||||||||  | |||||||  ||||||||||||||| |||||| ||||||||||||||||| | ||||||     
T  108664 catcatcaaggaattgtgctaaaaca-tttctttttagttcaaaatatatatcactctaaaatatactataataacaaacacaagaccaaga-ctcaatg 108567  T
Q  112 ttgaggatgcaaatgcatgaaatgcaaacagactatgatccggatatcgccccaattggcataatagtaataataatcgccccacttgacatataataaa 211  Q
    ||||   |||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||   |  ||||||||||| ||| |||||||||||    
T  108566 ttga---tgcaaatgcatgaaatgcaaacagaccatgatccggatatcatcccaattggcataatag---ttttaatcgccccatttggcatataataaa 108473  T
Q  212 gaatcgccccatttggcatataataataat 241  Q
    |||||||||| ||| |||||||||||||||    
T  108472 gaatcgccccttttagcatataataataat 108443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 147856 - 147993
Alignment:
Q  38 atttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaatattgaggatgcaaatgcatgaaatgca 137  Q
    |||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||| || || |||||||| |    |||| | |||||||| |||||    
T  147856 atttgtttttaatttaaaatattcatcactctaaaatatactatacgaacaaacacaaaactaataactcaatgt----gatgtagatgcatgagatgca 147951  T
Q  138 aacagactatgatccggatatcgccccaattggcataatagt 179  Q
    |  |||| ||||||||||||||||||||||||||||||||||    
T  147952 agtagaccatgatccggatatcgccccaattggcataatagt 147993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 35224 - 35361
Alignment:
Q  38 atttctttttaacttaaaatattcatcactctaaaatatgctataagaacaaacacaagaccaaaaactcaatattgaggatgcaaatgcatgaaatgca 137  Q
    |||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||| || || |||||||| |    |||| | |||||||| |||||    
T  35224 atttgtttttaatttaaaatattcatcactctaaaatatactatacgaacaaacacaaaactaataactcaatgt----gatgtagatgcatgagatgca 35319  T
Q  138 aacagactatgatccggatatcgccccaattggcataatagt 179  Q
    |  |||| |||||||||||||||||||||||| |||||||||    
T  35320 agtagaccatgatccggatatcgccccaattgacataatagt 35361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 22625601 - 22625553
Alignment:
Q  124 atgcatgaaatgcaaacagactatgatccggatatcgccccaattggca 172  Q
    |||||||| ||||||   ||| |||||||||||||||||||||||||||    
T  22625601 atgcatgagatgcaacttgaccatgatccggatatcgccccaattggca 22625553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 29955032 - 29955080
Alignment:
Q  124 atgcatgaaatgcaaacagactatgatccggatatcgccccaattggca 172  Q
    |||||||| ||||||   ||| |||||||||||||||||||||||||||    
T  29955032 atgcatgagatgcaacttgaccatgatccggatatcgccccaattggca 29955080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 31095012 - 31094964
Alignment:
Q  124 atgcatgaaatgcaaacagactatgatccggatatcgccccaattggca 172  Q
    |||||||| |||||   |||| |||||||||||||||||||||||||||    
T  31095012 atgcatgagatgcacctagaccatgatccggatatcgccccaattggca 31094964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University