View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6313_high_4 (Length: 271)
Name: NF6313_high_4
Description: NF6313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6313_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 24600580 - 24600346
Alignment:
| Q |
17 |
agccataatccgcattcttaaccagttcgaattatgtaatccaaactggtccacggctgtgttaaagcgtttactttggagggtttgagacattatagat |
116 |
Q |
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| T |
24600580 |
agccataatccacattcttaaccagttcgaattatgtaatccaaactggtccacgactgtgttaaagcgtttactttggagggtttgagacattttagat |
24600481 |
T |
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| Q |
117 |
tgtataatctaaacaagtcaagtacaaatttaaagtattaattttgggtatgactaattgaaggatgacactaactactcgtcgcttttcttttttaaat |
216 |
Q |
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| T |
24600480 |
tgtataatctaaactagtcaagtacaaatttaaagtattaattttgggtatgactaattgaacgatgacactaactactcgtcagttttcttttttaaat |
24600381 |
T |
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| Q |
217 |
agtcttcattgtgatattctaatttcgtctaatgg |
251 |
Q |
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| T |
24600380 |
agtctttattgtgatattctaatttcgtctaatgg |
24600346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 32557666 - 32557763
Alignment:
| Q |
47 |
attatgtaatccaaactggtccacggctgtgttaaagcgtttactttggagggtttgagacattatagattgtataatctaaacaagtcaagtacaaa |
144 |
Q |
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| T |
32557666 |
attatataatcgaaactagtccaagactgtgttaaaacgattattttgcagggtttgagacattttacattatataatttgaacatgtcaagtacaaa |
32557763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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