View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6313_low_1 (Length: 441)
Name: NF6313_low_1
Description: NF6313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6313_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 5695961 - 5695538
Alignment:
| Q |
11 |
cacagatagcagaattgcagcatttgcaggggcaagagagagccccatcatccctccacgcaattcattaggtacatacctgcaaacaaggaaattaaaa |
110 |
Q |
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| T |
5695961 |
cacagatagcagaattgcagcatttgcaggggcaagagagagccccatcatccctccacgcaattcattaggtacatacctgcaaacaaggaaattaaaa |
5695862 |
T |
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| Q |
111 |
atataaatccattattgagcaaacaaagaagtacaactctttgtaatgagattacatggtcctcaatctagcaagtgatggtaaaacgaagccaacacaa |
210 |
Q |
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| T |
5695861 |
atataaatccattattgagcaaacaaagaagtacaactctttgtaatgagattacatggtcctcaatctagcaagtgatggtaaaacgaagccaacacaa |
5695762 |
T |
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| Q |
211 |
gcatgaaacaagctaaaaagtgtcacaagaactccaatttcctgcacatgaaaaattgatgagtcaaatgtagacttcaagattgaaaatctgaccaaaa |
310 |
Q |
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| T |
5695761 |
gcatgaaacaagctaaaaagtgtcacaagaactccaatttcctgcacatgaaaaattgatgagtcaaatgtagacttcaagattgaaaatctgaccaaaa |
5695662 |
T |
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| Q |
311 |
gtatatttgagactttttaaagacaataacaactgcacctgatagtcataggccacaatagacaagagaacagccaatatgatgtatgcaaatactaggc |
410 |
Q |
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| T |
5695661 |
gtatatttgagactttttaaagacaataacaactgcacctgatagtcataggccacaatagacaagagaacagccaatatgatgtatgcaaatactaggc |
5695562 |
T |
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| Q |
411 |
agtcctcaattctaagtgatgatg |
434 |
Q |
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| T |
5695561 |
agtcctcaattctaagtgatgatg |
5695538 |
T |
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