View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6313_low_10 (Length: 239)
Name: NF6313_low_10
Description: NF6313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6313_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 43293065 - 43293266
Alignment:
| Q |
21 |
aagttggctacctgtaaattaagttcaatctattaaaatcctaaagtatcttcaagaataagattcatgcttggcatatttcttttcttcttttccaaat |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293065 |
aagttggctacctgtaaattaagttcaatctattaaaatcctaaagtatcttcaagaataagattcatgcttggcatatttcttttcttcttttccaaat |
43293164 |
T |
|
| Q |
121 |
ccgtttatatttttgccggatcataacaggatggtgtaaacagtatttttagtccacttgtgagttgtctcatacacatgatttagatagcattgtaatc |
220 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293165 |
ccgtttatatttttgccggatcataacatgatggtgtaaacagtatttttagtccacttgtgagttgtctcatacacatgatttagatagcattgtaatc |
43293264 |
T |
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| Q |
221 |
tt |
222 |
Q |
| |
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|| |
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| T |
43293265 |
tt |
43293266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 44027913 - 44027711
Alignment:
| Q |
21 |
aagttggctacctgtaaattaagttcaatctattaaaatcctaaagtatcttcaagaataagatt-catgcttggcatatttcttttcttcttttccaaa |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
44027913 |
aagttggctacctgtaaattaagttcaatctattaaaatcctaaagtatcttcaagaataagatttcatgcttggcatatttctttttttcttttccaaa |
44027814 |
T |
|
| Q |
120 |
tccgtttatatttttgccggatcataacaggatggtgtaaacagtatttttagtccacttgtgagttgtctcatacacatgatttagatagcattgtaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44027813 |
tccgtttatatttttgccggatcataacaggatggtgtaaacggtatttttagtccacttgtgagttgtttcatacacatgatttagatagcattgtaat |
44027714 |
T |
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| Q |
220 |
ctt |
222 |
Q |
| |
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||| |
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| T |
44027713 |
ctt |
44027711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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