View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6313_low_2 (Length: 370)
Name: NF6313_low_2
Description: NF6313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6313_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 5415538 - 5415731
Alignment:
| Q |
18 |
tcaggtccttggatccacattagcaagtggaaccctcagactaatatttaatggtgaagatgatcattttattggaacacttccagctggttctaatttg |
117 |
Q |
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| T |
5415538 |
tcaggtccttggatccacattagcaagtggaagcctcagactaatatttaatggtgaagatgatcattttattggaacacttccagctggttctaatttg |
5415637 |
T |
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| Q |
118 |
caagcttttgtaatcgagttcatatgcactttcttccttatgtttgttattactgcagtagccaccgataacagagcggtaatgtttcctactc |
211 |
Q |
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| T |
5415638 |
caagcttttgtaatcgagttcatatgcactttcttccttatgtttgttattactgcagtagccaccgataacagagcggtaatgtttcctactc |
5415731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 5415832 - 5415894
Alignment:
| Q |
300 |
aacttatataaagatatcttttggaagaagagttcttcaaaatagtagtggtatgcttttcat |
362 |
Q |
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| T |
5415832 |
aacttatataaagatatcttttggaataagagttcttcaaaatagtagtggtatgcatttcat |
5415894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 5397650 - 5397759
Alignment:
| Q |
91 |
ggaacacttccagctggttctaatttgcaagcttttgtaatcgagttcatatgcactttcttccttatgtttgttattactgcagtagccaccgataaca |
190 |
Q |
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| T |
5397650 |
ggaacacttccagctggttctgatcttcaagcttttgtggtcgaatttattatcactttcttccttatgttcatcatttctggagttgccactgataata |
5397749 |
T |
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| Q |
191 |
gagcggtaat |
200 |
Q |
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| T |
5397750 |
gagcggtaat |
5397759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 5407186 - 5407130
Alignment:
| Q |
144 |
cactttcttccttatgtttgttattactgcagtagccaccgataacagagcggtaat |
200 |
Q |
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| T |
5407186 |
cactttctaccttatgttcgtcatttctggagttgccaccgataatagagcggtaat |
5407130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 36268275 - 36268448
Alignment:
| Q |
26 |
ttggatccacattagcaagtggaaccctcagactaatatttaatggtgaagatgatcattttattggaacacttccagctggttctaatttgcaagcttt |
125 |
Q |
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| T |
36268275 |
ttggatccacacttgcaagtggaactcttagactaatatttaccggcaaacataatcaatttgttggaacacttccagctgggtctgaccttcaagcttt |
36268374 |
T |
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| Q |
126 |
tgtaatcgagttcatatgcactttcttccttatgtttgttattactgcagtagccaccgataacagagcggtaa |
199 |
Q |
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| T |
36268375 |
tgtgattgaattcatcatcactttttaccttatgtttatcatatctggagttgccactgataatagagcggtaa |
36268448 |
T |
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