View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6313_low_3 (Length: 285)
Name: NF6313_low_3
Description: NF6313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6313_low_3 |
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| [»] scaffold1079 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 18348020 - 18347748
Alignment:
| Q |
1 |
ggatcaactaggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18348020 |
ggatcaactaggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaa |
18347921 |
T |
|
| Q |
101 |
tgcgacctattatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattccacctcttagaaaagaacttaactaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
18347920 |
tgcgacctattatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattctacctcttagaaaagaacttaaataaaa |
18347821 |
T |
|
| Q |
201 |
atacacttaatagcatggcgatacatttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347820 |
atacacttaatagcatggcgatacatttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
18347748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 16899505 - 16899233
Alignment:
| Q |
1 |
ggatcaactaggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16899505 |
ggatcaactaggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaatggtagaagaa |
16899406 |
T |
|
| Q |
101 |
tgcgacctattatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattccacctcttagaaaagaacttaactaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
16899405 |
tgcgacctattatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattctacctcttagaaaagaacttaaataaaa |
16899306 |
T |
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| Q |
201 |
atacacttaatagcatggcgatacatttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16899305 |
atacacttaatagcatggcgatacatttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
16899233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 13236471 - 13236743
Alignment:
| Q |
1 |
ggatcaactaggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13236471 |
ggatcaactaggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaa |
13236570 |
T |
|
| Q |
101 |
tgcgacctattatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattccacctcttagaaaagaacttaactaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
13236571 |
tgcgacctattatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattctacctcttagaaaagaacttaaataaaa |
13236670 |
T |
|
| Q |
201 |
atacacttaatagcatggcgatacatttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13236671 |
atacacttaatagcatggcgatacatttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
13236743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 512 - 254
Alignment:
| Q |
1 |
ggatcaactaggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaa |
100 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
512 |
ggatcaactaggacagaaataaagcattgggtcgaactcttctttggtgtcaaggtaatagctatgaatagtcatcgactcccccgaaagggtagaagaa |
413 |
T |
|
| Q |
101 |
tgcgacctattatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattccacctctta----gaaaagaacttaact |
196 |
Q |
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|| |||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
412 |
tgggacctattatgggacatacaatgcattacaggcgtatgatcattacgcttcaaccgggttattctattccacctcttacaacgaaaagaacttaaat |
313 |
T |
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| Q |
197 |
aaaaatacacttaatagcatggcgatacatttatacaaaacttctatcccgagcacccgca |
257 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||| |
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| T |
312 |
caaaat--acttaatagcatggcgatacatttatacaaaacttctaccccgggcacacgca |
254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 10404058 - 10403965
Alignment:
| Q |
3 |
atcaactaggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtaga |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10404058 |
atcaactaggacagaaataaaacattgggtcgaactcttatttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtaga |
10403965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 197960 - 198128
Alignment:
| Q |
7 |
actaggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgac |
106 |
Q |
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|
|||| |||||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||| |||||||| || ||| ||||||||||| ||| |
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| T |
197960 |
actaagacagaaataaagcattgggtcgaactcttctttggtgttaaggtggtagctgtgaatagccatcgactacctggaaaaggtagaagaataggac |
198059 |
T |
|
| Q |
107 |
ctattatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattccac |
175 |
Q |
| |
|
||||| |||| |||| | |||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
198060 |
ctattctgggccatacaatgcattacagacgtatgatcattacccttcaaccgggttattctattccac |
198128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 256395 - 256562
Alignment:
| Q |
7 |
actaggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgac |
106 |
Q |
| |
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|||| |||||||||||| |||||| || ||||||| ||||| | ||||| ||||| ||||||| |||||||| || ||| ||||||||||| ||| |
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| T |
256395 |
actaagacagaaataaagcattggttcaaactcttctttggatt-aaggtggtagctgtgaatagccatcgactacctggaaaaggtagaagaataggac |
256493 |
T |
|
| Q |
107 |
ctattatgggacatagaccgcattacaaacgtatgatcattacgcttcaaccgggttattctattccac |
175 |
Q |
| |
|
||||| |||| | || | |||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
256494 |
ctattctgggccgtacaatgcattacagacgtatgatcattacccttcaaccgggttattctattccac |
256562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 42203382 - 42203482
Alignment:
| Q |
1 |
ggatcaactaggacagaaataaaacattgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
42203382 |
ggatcaactaggatagaaataaaacattgggtcgaactcttctttgatgtcaaggtaatagctatgaatagtcatcgactcccaataaaggataaaagaa |
42203481 |
T |
|
| Q |
101 |
t |
101 |
Q |
| |
|
| |
|
|
| T |
42203482 |
t |
42203482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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