View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6313_low_8 (Length: 242)

Name: NF6313_low_8
Description: NF6313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6313_low_8
NF6313_low_8
[»] chr5 (4 HSPs)
chr5 (1-223)||(18313488-18313710)
chr5 (60-225)||(34378170-34378336)
chr5 (60-222)||(698433-698596)
chr5 (60-224)||(18593315-18593480)
[»] chr3 (13 HSPs)
chr3 (60-223)||(31482956-31483119)
chr3 (60-224)||(34475600-34475763)
chr3 (50-225)||(47235761-47235936)
chr3 (50-224)||(45163918-45164092)
chr3 (50-224)||(20611846-20612019)
chr3 (50-224)||(2392350-2392524)
chr3 (69-224)||(53247981-53248138)
chr3 (60-224)||(17551029-17551189)
chr3 (97-224)||(2394114-2394242)
chr3 (52-225)||(43012440-43012613)
chr3 (52-227)||(19176567-19176744)
chr3 (149-224)||(30352285-30352359)
chr3 (50-170)||(40023472-40023590)
[»] chr7 (13 HSPs)
chr7 (60-233)||(47325720-47325894)
chr7 (60-224)||(5860132-5860297)
chr7 (60-225)||(44353406-44353573)
chr7 (60-202)||(37795061-37795204)
chr7 (60-224)||(38306333-38306498)
chr7 (60-223)||(3419500-3419665)
chr7 (60-224)||(10244254-10244419)
chr7 (50-224)||(25160878-25161048)
chr7 (119-224)||(31971978-31972084)
chr7 (69-170)||(33435191-33435291)
chr7 (118-225)||(3867246-3867354)
chr7 (50-170)||(34390025-34390143)
chr7 (52-202)||(41089614-41089764)
[»] chr2 (4 HSPs)
chr2 (60-224)||(10524173-10524337)
chr2 (60-224)||(39338709-39338874)
chr2 (60-224)||(17116723-17116889)
chr2 (75-224)||(387262-387411)
[»] chr8 (12 HSPs)
chr8 (60-225)||(20138498-20138665)
chr8 (60-224)||(9519571-9519737)
chr8 (60-223)||(12898120-12898283)
chr8 (61-224)||(31207206-31207370)
chr8 (60-224)||(37986702-37986867)
chr8 (60-224)||(24995238-24995404)
chr8 (60-224)||(32066139-32066304)
chr8 (60-224)||(41893246-41893410)
chr8 (60-166)||(16457364-16457470)
chr8 (60-222)||(34388852-34389014)
chr8 (91-170)||(22773602-22773681)
chr8 (60-157)||(36630909-36631006)
[»] chr1 (9 HSPs)
chr1 (50-224)||(24449774-24449948)
chr1 (60-224)||(46692663-46692828)
chr1 (60-224)||(5459233-5459398)
chr1 (60-219)||(31585608-31585769)
chr1 (61-222)||(41920525-41920692)
chr1 (61-175)||(30685798-30685912)
chr1 (60-224)||(5389266-5389430)
chr1 (95-225)||(6764224-6764355)
chr1 (53-157)||(24684390-24684493)
[»] chr4 (5 HSPs)
chr4 (60-224)||(8255099-8255264)
chr4 (60-224)||(8268517-8268682)
chr4 (60-156)||(30964513-30964609)
chr4 (60-220)||(30167412-30167573)
chr4 (60-214)||(4305797-4305951)
[»] scaffold0343 (1 HSPs)
scaffold0343 (60-224)||(5777-5943)
[»] scaffold0068 (1 HSPs)
scaffold0068 (50-202)||(35640-35790)
[»] chr6 (2 HSPs)
chr6 (60-223)||(3117565-3117729)
chr6 (123-224)||(10541967-10542069)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 18313710 - 18313488
Alignment:
Q  1 tctcataacaagactgtgaacctctcgaaaacgaaaactgaaataaactttaagttggttttttggg-ctttgtgttgtactctttcggtagattgaagg 99  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||| |||||||||    
T  18313710 tctcataacaagactgtgaacctctcaaaaacgaaaactgaaataaactt-aagttggtttttttggactttgtgttgtactctttcggtggattgaagg 18313612  T
Q  100 tcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttttctttagggtgtt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  18313611 tcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagtttgggttttaggattttggagtttttctttagggtgtt 18313512  T
Q  200 cttcatgggtgagtagtgacgatg 223  Q
    ||||||||||||||||||||||||    
T  18313511 cttcatgggtgagtagtgacgatg 18313488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 34378170 - 34378336
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    |||||||||||||| |||| |||||||||| ||  | ||||||||||||||||||||| ||  ||||| |||| |||| ||||||||| ||||||||| |    
T  34378170 tttttgggctttgttttgtgctctttcggtggaccggaggtcgcgaggtttgtgatagttgtttgatccttcggttagatgctcttcgtaatgtggctca 34378269  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgga 225  Q
    ||||||||||| || |||  ||||||| | || |||||||||||  |||||||||||||||||||||    
T  34378270 gcttgggtgttggggtttgagagttttattttgagggtgttctttgtgggtgagtagtgacgatgga 34378336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 698433 - 698596
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||||||||||| || | |   |||| |||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||| |    
T  698433 tttttgggctttgtgttgtactctttctgtggttcagaggttgcgaggtttgtgatagctgcataatccttcggttaggtgctctttgaaatgtggctca 698532  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgat 222  Q
    ||||||||||| || | |  ||||||| | |  |||||||||||  ||||||||||||||||||    
T  698533 gcttgggtgttggggtctgagagttttatttggagggtgttctttgtgggtgagtagtgacgat 698596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 18593315 - 18593480
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||| ||||||| |||||||||| | | | |||||||||| |||||||||| ||||||||| |||| ||||||| |||||||||||||||| |    
T  18593315 tttttgggcttagtgttgtgctctttcggtggttcggaggtcgcgagatttgtgataggtgcatgatccttcggttaggtgttcttcgaaatgtggctca 18593414  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
     |||||||||| || | | |||||||| | |  ||| |||||||  ||||||||||||||||||||    
T  18593415 acttgggtgttggggtctgggagttttatttggaggatgttctttgtgggtgagtagtgacgatgg 18593480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 31482956 - 31483119
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |    
T  31482956 tttttgggctttgtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggctca 31483055  T
Q  160 gcttgggtgttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatg 223  Q
    |||| |||||| || |||  |||||||| || |||||||||||  ||||| |||||||||||||    
T  31483056 gcttaggtgttggggtttgagagttttttttaagggtgttctttgtgggttagtagtgacgatg 31483119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 34475763 - 34475600
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| || |    
T  34475763 tttttgggctttgtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagctgtatgatccttcggttaggtgctcttcgaaatgtgactca 34475664  T
Q  160 gcttgggtgttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    |||| |||||| || | |  |||||||| || |||||||||||  ||||||||||||||||||||    
T  34475663 gcttaggtgttggggtatgagagttttt-ttaagggtgttctttgtgggtgagtagtgacgatgg 34475600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 50 - 225
Target Start/End: Original strand, 47235761 - 47235936
Alignment:
Q  50 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 149  Q
    ||||||||||||| ||||||||||||| | |||||||||| |||   ||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  47235761 ttaagttggtttt-tgggctttgtgttttgctctttcggtggatcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaa 47235859  T
Q  150 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgga 225  Q
    |||||| | |||||||||||| || | |  ||||||| | || |||||||||||  |||||||||||||||||||||    
T  47235860 atgtggttcagcttgggtgttggggtctgcgagttttattttgagggtgttctttgtgggtgagtagtgacgatgga 47235936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 50 - 224
Target Start/End: Original strand, 45163918 - 45164092
Alignment:
Q  50 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 149  Q
    ||||||||||||| ||||||||||||||| |||||||||| ||| | ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  45163918 ttaagttggtttt-tgggctttgtgttgtgctctttcggtggatcggaggtcacgaagtttgtgatagctgcatgatccttcggttaggtgctcttcgaa 45164016  T
Q  150 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||||||||||||||||||||| || | | |||||||| | || |||||||| ||  | ||||| ||||||||||||    
T  45164017 atgtggcttagcttgggtgttggggtctaggagttttattttgagggtgttatttgtaggtgattagtgacgatgg 45164092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 224
Target Start/End: Original strand, 20611846 - 20612019
Alignment:
Q  50 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 149  Q
    ||||||||||||| ||||||||| ||||| |||||||||| ||| | |||||||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  20611846 ttaagttggtttt-tgggctttgcgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaa 20611944  T
Q  150 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||||| || |||||||||||| || | | |||||||| |  | |||||||||||  ||||||||||||||||||||    
T  20611945 atgtgactcagcttgggtgtt-gggtctaggagttttattctgagggtgttctttgtgggtgagtagtgacgatgg 20612019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 2392524 - 2392350
Alignment:
Q  50 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 149  Q
    |||||||||||||| |||||||||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||||| |||| |||||  |||||| ||    
T  2392524 ttaagttggttttt-gggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaa 2392426  T
Q  150 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    |||||||| |||||||||||| || | | |||||||| | ||   |||||| ||  ||||||||||||||||||||    
T  2392425 atgtggctcagcttgggtgttggggtctaggagttttattttgtaggtgttatttgtgggtgagtagtgacgatgg 2392350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 224
Target Start/End: Original strand, 53247981 - 53248138
Alignment:
Q  69 tttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtg 168  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||| || |||||||    
T  53247981 tttgtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagttgtatgatccttcggttatgtgctcttcgaaatgtggctcagtttgggtg 53248080  T
Q  169 ttaggattttggagtttttcttt--agggtgttcttcatgggtgagtagtgacgatgg 224  Q
    || || | |  |||||||| |||  || ||||||||  ||||||||||||||||||||    
T  53248081 ttggggtctgagagtttttattttgagagtgttctttgtgggtgagtagtgacgatgg 53248138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 17551029 - 17551189
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||| |  || | ||||||||||||||||||||||||||||||     | |||||||||||||||||||||||| |    
T  17551029 tttttgggctttgtgttgtgctctttcgatgcatcggaggtcgcgaggtttgtgatagctgcatgat-----ggttaggtgctcttcgaaatgtggctca 17551123  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    | ||||||||| || | |  ||||||| | || |||||||||||  | ||||||||||||||||||    
T  17551124 gtttgggtgttggggtctgagagttttattttgagggtgttctttgtcggtgagtagtgacgatgg 17551189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 2394242 - 2394114
Alignment:
Q  97 aggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttaggg 195  Q
    ||||||||||||||||| ||||||||||||| |||| |||||  |||||| |||||||||| |||||||||||| || | | |||||||| | ||   ||    
T  2394242 aggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttgtagg 2394143  T
Q  196 tgttcttcatgggtgagtagtgacgatgg 224  Q
    |||| ||  ||||||||||||||||||||    
T  2394142 tgttatttgtgggtgagtagtgacgatgg 2394114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 43012440 - 43012613
Alignment:
Q  52 aagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaat 151  Q
    ||||||||||||  |  ||||| |||| ||||||||||  ||   ||||||||||||| |||  || ||||||||| |||| | ||||||||||||||||    
T  43012440 aagttggtttttgagcttttgttttgtgctctttcggtgaatcagaggtcgcgaggtt-gtggaagttgcatgatcgttcggtcaggtgctcttcgaaat 43012538  T
Q  152 gtggcttagcttgggtgttaggattttggagtttttcttt-agggtgttcttcatgggtgagtagtgacgatgga 225  Q
    |||||| |||||||||||| || | | ||||||||  ||| |||||||||||    ||||||||||| |||||||    
T  43012539 gtggctcagcttgggtgttggggtctaggagttttaatttgagggtgttctttggaggtgagtagtggcgatgga 43012613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 19176567 - 19176744
Alignment:
Q  52 aagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcatt--cgtttaggtgctcttcgaa 149  Q
    |||||||||||| ||  ||||  |||| |||||| ||| ||| | ||||||| ||||| |||  |||||||||||| ||  || | |||||||||||| |    
T  19176567 aagttggtttttgggcttttgatttgtgctcttttggtggatcggaggtcgcaaggtt-gtggaagctgcatgatccttttcggtcaggtgctcttcgta 19176665  T
Q  150 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatg 227  Q
    |||||||| |||||||||||  || | | || ||||| | || ||||||||||| | ||||||||||||||||||||||    
T  19176666 atgtggctcagcttgggtgtcggggtctgggtgttttattttgagggtgttctttaggggtgagtagtgacgatggatg 19176744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 30352359 - 30352285
Alignment:
Q  149 aatgtggcttagcttgggtgttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||||||||| |||||||||||| || | | ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  30352359 aatgtggctcagcttgggtgttggggtctcggagttttt-tttagggtgttctttgtggatgagtagtgacgatgg 30352285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 40023590 - 40023472
Alignment:
Q  50 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 149  Q
    |||||||||||||| ||  ||||| |||| |||||||||| |||   ||| || |||| |||||  ||||||||| ||||||| ||||| ||| |||| |    
T  40023590 ttaagttggtttttgggcttttgttttgtgctctttcggtggatcagaggacgggagg-ttgtggaagctgcatgttcattcggttaggagcttttcg-a 40023493  T
Q  150 atgtggcttagcttgggtgtt 170  Q
    |||||||| |||| |||||||    
T  40023492 atgtggctcagctagggtgtt 40023472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 60 - 233
Target Start/End: Complemental strand, 47325894 - 47325720
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||| ||| |||||||| | ||| | |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |    
T  47325894 tttttgggctttgtgctgtgctctttcgatggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtggctca 47325795  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatg 233  Q
    ||||||||||| || | | |||||||| | || |||||||||||  ||||||||||||||||||||  |||||||    
T  47325794 gcttgggtgttggggtctgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatgatg 47325720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 5860297 - 5860132
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||| |    
T  5860297 tttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcagttaggtgctcttcgaaatgtggctca 5860198  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||||||||||| || | | |||||||| | || |||||||||||  ||| ||||||||||||||||    
T  5860197 gcttgggtgttggggtctgggagttttattttcagggtgttctttgtggatgagtagtgacgatgg 5860132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 44353573 - 44353406
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |       
T  44353573 tttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccg 44353474  T
Q  160 gcttgggtgttaggattttggagttt--ttctttagggtgttcttcatgggtgagtagtgacgatgga 225  Q
    ||||||||||| || | | |||||||  || || |||||||||||  | |||||||||||||||||||    
T  44353473 gcttgggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgagtagtgacgatgga 44353406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 37795061 - 37795204
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |    
T  37795061 tttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaactgtggctca 37795160  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttctt 202  Q
    ||||||||||| || |||  ||||||| | || |||||||||||    
T  37795161 gcttgggtgttggggtttgagagttttattttgagggtgttctt 37795204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 38306333 - 38306498
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||| | | | | ||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||| |    
T  38306333 tttttgggctttgtgttgtgctctttcgatggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaagtgctcttcgatatgtggctca 38306432  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||||||||||| || | |  ||||||| | || |||||||||||  | ||||||||||||||||||    
T  38306433 gcttgggtgttggggtctgtgagttttattttgagggtgttctttgtaggtgagtagtgacgatgg 38306498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 3419665 - 3419500
Alignment:
Q  60 tttttgggctttgtgt-tgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctt 158  Q
    |||||||||||||| | ||| |||||||||| |||   ||||| | ||||||||||||||||| ||||| |||| |||||||| ||||||| ||||||||    
T  3419665 tttttgggctttgtttctgtgctctttcggtggatcagaggtcacaaggtttgtgatagctgcttgatccttcggttaggtgcgcttcgaattgtggctt 3419566  T
Q  159 agcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatg 223  Q
    | |||||||||| || ||| |||||||| | || |||||||||||  || ||||||||||||||||    
T  3419565 aacttgggtgttggggtttgggagttttattttaagggtgttctttgtgagtgagtagtgacgatg 3419500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 10244254 - 10244419
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||| ||||||||||| ||||||| || | | | ||||||||||||||||||||| ||||||||| |||| |||||||||||| ||| ||||||| |    
T  10244254 tttttggcctttgtgttgtgctctttcagtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctctttgaattgtggctca 10244353  T
Q  160 gcttgggtgttaggattttggagtttttctt-tagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||||||||||| || | | ||| ||||  ||  |||||| ||||  ||||||||||||||||||||    
T  10244354 gcttgggtgtttgggtctgggatttttagttggagggtggtctttgtgggtgagtagtgacgatgg 10244419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 224
Target Start/End: Original strand, 25160878 - 25161048
Alignment:
Q  50 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 149  Q
    |||||||||||||| |||||  ||||||| |||||||||| ||||| ||||| | ||||||||||||||||  ||||| |||  |||||||||||| |||    
T  25160878 ttaagttggttttt-gggct--gtgttgtgctctttcggtggattggaggtctcaaggtttgtgatagctgtgtgatccttcagttaggtgctcttggaa 25160974  T
Q  150 atgtggcttagcttgggtgttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    |||||||| | ||| | |||| || | |  |||||||| || | |||||||||  ||||||||||||||||||||    
T  25160975 atgtggctcaacttagatgttggggtctgagagttttt-ttaaaggtgttctttgtgggtgagtagtgacgatgg 25161048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 31972084 - 31971978
Alignment:
Q  119 tgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtg 217  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||||| || | | |||||||| | |  |||||||||||  |||||||||||||    
T  31972084 tgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttatttggagggtgttctttgtgggtgagtagtg 31971985  T
Q  218 acgatgg 224  Q
    |||||||    
T  31971984 acgatgg 31971978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 33435191 - 33435291
Alignment:
Q  69 tttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtg 168  Q
    ||||| |||| |||||||||| ||| | ||||||||||||| |||| |||| ||||||| |||| | |||||||||||||| ||||||| ||||||| ||    
T  33435191 tttgttttgtgctctttcggtggatcggaggtcgcgaggtt-gtgaaagctacatgatccttcggtcaggtgctcttcgaattgtggctcagcttggttg 33435289  T
Q  169 tt 170  Q
    ||    
T  33435290 tt 33435291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 3867246 - 3867354
Alignment:
Q  118 ctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttttcttt--agggtgttcttcatgggtgagtag 215  Q
    |||||||||| || | | ||||||||||||| |||||||| |||||||||||| ||| | ||||  |||| |||  |||||||||||   ||||||||||    
T  3867246 ctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgggtgtt-ggagtatggaagttttattttgagggtgttctttgggggtgagtag 3867344  T
Q  216 tgacgatgga 225  Q
    ||||||||||    
T  3867345 tgacgatgga 3867354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 170
Target Start/End: Original strand, 34390025 - 34390143
Alignment:
Q  50 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 149  Q
    |||||||||||||| ||  ||| | |||| |||||||||| ||| | |||||| |||| |||||  ||||||||| ||||||| ||||| ||| ||| ||    
T  34390025 ttaagttggtttttgggcttttattttgtgctctttcggtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcgattaggagcttttc-aa 34390122  T
Q  150 atgtggcttagcttgggtgtt 170  Q
    |||||||| | ||||||||||    
T  34390123 atgtggctcaacttgggtgtt 34390143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 202
Target Start/End: Complemental strand, 41089764 - 41089614
Alignment:
Q  52 aagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaat 151  Q
    ||||||||||||  |  ||||| ||||  ||||||||| ||| | ||||||||||||| |||  |||||||||||  |||||| |||||||||||||| |    
T  41089764 aagttggtttttgagcttttgttttgtgatctttcggtggatcggaggtcgcgaggtt-gtggaagctgcatgattcttcgttgaggtgctcttcgaagt 41089666  T
Q  152 gtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttctt 202  Q
    || ||| |   ||||||||||| | | |||||||| | || |||||||||||    
T  41089665 gtagctcaagatgggtgttagggtctgggagttttattttgagggtgttctt 41089614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 10524173 - 10524337
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |    
T  10524173 tttttgggctttgtgttgtgctctttcggt-gttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgatatgtggctca 10524271  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||||||||||| || ||| |||||||| | |  |||||||||||  ||||||||||||||||||||    
T  10524272 gcttgggtgttggggtttgggagttttatttggagggtgttctttgtgggtgagtagtgacgatgg 10524337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 39338874 - 39338709
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||||| |||||| |||| |||||||||||||||| |||| || |    
T  39338874 tttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaattgtgactca 39338775  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    |||||||||||  | | | |||||||| | || |||||||||||  ||||||||||||||||||||    
T  39338774 gcttgggtgttgaggtctgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgg 39338709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 17116889 - 17116723
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||| |||||||| |||| || ||||| ||||||| |||||||||||||||||||| || | |||||  ||| |||||||||||||| ||||||||| |    
T  17116889 tttttaggctttgttttgtgctttttcgatagattggaggtcgcgaggtttgtgatatctacttgatccatcggttaggtgctcttcgtaatgtggctca 17116790  T
Q  160 gcttgggtgttaggattttggagtttttcttt--agggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||||||||||| || | |  |||||||| |||  |||||||||||  |||||||||| |||||||||    
T  17116789 gcttgggtgttggggtctgagagtttttattttgagggtgttctttgtgggtgagtaatgacgatgg 17116723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 387262 - 387411
Alignment:
Q  75 ttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttagga 174  Q
    |||| |||||| ||| ||| | ||||| ||||||||  || ||||||||| ||||||  | ||||||||||||| | |||||| |||||||||||| ||     
T  387262 ttgtgctcttttggtggatcggaggtcacgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttgggg 387360  T
Q  175 ttttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    | | |||||||| | || |||||||||||   |||||| ||||||||||||    
T  387361 tctgggagttttattttgagggtgttctttgggggtgaatagtgacgatgg 387411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 20138498 - 20138665
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |       
T  20138498 tttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccg 20138597  T
Q  160 gcttgggtgttaggattttggagttt--ttctttagggtgttcttcatgggtgagtagtgacgatgga 225  Q
    ||||||||||| || | | |||||||  || || |||||||||||  | |||||||||||||||||||    
T  20138598 gcttgggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgagtagtgacgatgga 20138665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 9519571 - 9519737
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||||| | | | |||| |||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |    
T  9519571 tttttgggctttgtgttgtgctctttcggtgggtcggaggttgcgaagtttgtgatagctgcatgatcattcggttaggtgctcttcgaaatatggctca 9519670  T
Q  160 gcttgggtgttaggattttg-gagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||||||||||| ||  | || ||||||| | || |||||||||||  ||||||||||||||||||||    
T  9519671 gcttgggtgttgggggtctgagagttttattttgagggtgttctttgtgggtgagtagtgacgatgg 9519737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 12898283 - 12898120
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    |||| |||||||||||||| |||||||| | | | | ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |    
T  12898283 ttttggggctttgtgttgtgctctttcgatggttcggaggtcgcgaggtttgtgatagctgc-tgatccttcggttaggtgctcttcgaaatgtggctca 12898185  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatg 223  Q
    ||||||||||| || | || ||||||| | || |||||||||||  |||||||||||||||||||    
T  12898184 gcttgggtgttggggtcttagagttttattttgagggtgttctttgtgggtgagtagtgacgatg 12898120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 61 - 224
Target Start/End: Complemental strand, 31207370 - 31207206
Alignment:
Q  61 ttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttag 160  Q
    ||||||| |||||||||| || ||||||| ||| | |||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||| ||    
T  31207370 ttttgggatttgtgttgtgctttttcggtggatcggaggtcgcgaggtttgtgatagctgaatgacccttcggttaggtgctcttcgaaatgtggctcag 31207271  T
Q  161 cttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    |||||||||| |  | | |||||||| | || |||||||||||  ||||||||||||||||||||    
T  31207270 cttgggtgttggagtatgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgg 31207206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 37986867 - 37986702
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    |||||| |||||||||||| |||||||||| | | | ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |    
T  37986867 tttttgtgctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcctgatccttcggttaggtgctcttcgaaatgtggctca 37986768  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    |||||||||||  | | | |||||||| | |  |||||||||||  |||||||||| |||||||||    
T  37986767 gcttgggtgtttcggtctgggagttttatttggagggtgttctttgtgggtgagtaatgacgatgg 37986702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 24995404 - 24995238
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| ||||||| || | |   ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |    
T  24995404 tttttgggctttgtgttgtgctctttcagtgggtcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatatggctca 24995305  T
Q  160 gcttgggtgtt-aggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    |||||||||||  || | | |||||||| | || |||||||||||  || |||||||||||||||||    
T  24995304 gcttgggtgttgggggtctaggagttttattttgagggtgttctttgtgcgtgagtagtgacgatgg 24995238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 32066304 - 32066139
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||||| | |   |||| ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| | |    
T  32066304 tttttgggctttgtgttgtgctctttcggtggttcagaggttgcgaggtttgtgatagctgcatgatcattcggttagatgctctttgaaatgtggttca 32066205  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||||||||||| || | |  ||||||| | |  |||||||||||  || |||||||||||||||||    
T  32066204 gcttgggtgttggggtctgagagttttatttggagggtgttctttgtgagtgagtagtgacgatgg 32066139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 41893410 - 41893246
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||| ||| | |   ||||||| ||||||||||||||||||||||| ||| | ||||| ||||||||||||||||| |    
T  41893410 tttttgggctttgtgttgtgctcttttggtggttaagaggtcgcaaggtttgtgatagctgcatgatccttc-tataggtactcttcgaaatgtggctca 41893312  T
Q  160 gcttgggtgttaggattttggagtt-tttctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    |||||||||||  | | | |||||| | | || |||||||||||  ||||||||||||||||||||    
T  41893311 gcttgggtgttgaggtctgggagttctattttcagggtgttctttgtgggtgagtagtgacgatgg 41893246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 16457470 - 16457364
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||| ||||||||||||| |||||||||| | | | | |||| |||||||||||||||||||||||| |  | |||||||||||| ||||||||||| |    
T  16457470 tttttaggctttgtgttgtgctctttcggtggttcggatgtcgtgaggtttgtgatagctgcatgatcttgtggttaggtgctctttgaaatgtggctca 16457371  T
Q  160 gcttggg 166  Q
    |||||||    
T  16457370 gcttggg 16457364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 222
Target Start/End: Complemental strand, 34389014 - 34388852
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| || ||||||| ||| | |||||| ||||||||||||||||   ||||| |||  ||||||| |||||   |||||||| |    
T  34389014 tttttgggctttgtgttgtgctatttcggtggatcgtaggtcgtgaggtttgtgatagct-agtgatccttcagttaggtgttcttcatcatgtggctca 34388916  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgat 222  Q
    ||||||||||| || | |  ||||||| | || |||||||||||  ||||||||||||||||||    
T  34388915 gcttgggtgttggggtatgagagttttattttgagggtgttctttgtgggtgagtagtgacgat 34388852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 22773602 - 22773681
Alignment:
Q  91 gattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgtt 170  Q
    ||||| ||||| |||||||||||||| || ||||||| |||  |||||||||||||||||||||||| || |||||||||    
T  22773602 gattggaggtcacgaggtttgtgatatctacatgatccttctgttaggtgctcttcgaaatgtggctcagtttgggtgtt 22773681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 36630909 - 36631006
Alignment:
Q  60 tttttgggcttt-gtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggct 157  Q
    |||||||||||| || |||| |||||||| | ||| | ||||||||||||| |||  |||||||||||| |||| | ||||||||||||||||||||||    
T  36630909 tttttgggcttttgttttgtgctctttcgatggatcggaggtcgcgaggtt-gtgggagctgcatgatccttcggtcaggtgctcttcgaaatgtggct 36631006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 24449948 - 24449774
Alignment:
Q  50 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 149  Q
    |||||||||||||| ||| |||||||||| |||||| ||| ||| | ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  24449948 ttaagttggttttt-gggatttgtgttgtgctcttttggtggatcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctcttcgaa 24449850  T
Q  150 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||| |||| |||||||||||| || | | |||||||| | || |||||||| ||  ||||||||||||||||||||    
T  24449849 atgcggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgg 24449774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 46692828 - 46692663
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||| ||| | || ||| |||||||||||||||||||| |    
T  46692828 tttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcattatcctccggttaagtgctcttcgaaatgtggctca 46692729  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||||||||||| || | | | |||||| | |  |||||||||||  ||||||||||||||||||||    
T  46692728 gcttgggtgttggggtctggaagttttatttggagggtgttctttgtgggtgagtagtgacgatgg 46692663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 5459233 - 5459398
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| ||||||| || | | | |||| |||||||||||||||||||||||||| |||  |||||||||||| ||||||||||| |    
T  5459233 tttttgggctttgtgttgtgctctttcagtggttcggaggttgcgaggtttgtgatagctgcatgatccttcagttaggtgctctttgaaatgtggctca 5459332  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||||||||||| || | | | |||||| | || | |||||||||  ||||||||||||||||||||    
T  5459333 gcttgggtgttggggtctggaagttttattttgatggtgttctttgtgggtgagtagtgacgatgg 5459398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 31585769 - 31585608
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| || ||||||| | | | |||||||||||||||||||||||| |||||| || | |||||||||||||||||||||||| |    
T  31585769 tttttgggctttgtgttgtgctatttcggtgggtcggaggtcgcgaggtttgtgatagctgtatgatcctttggttaggtgctcttcgaaatgtggctaa 31585670  T
Q  160 gcttgggtgttaggattttg-gagtttt-tctttagggtgttcttcatgggtgagtagtgac 219  Q
    ||||||||||| ||  | || ||||||| | || |||||||||||  |||||||||||||||    
T  31585669 gcttgggtgttgggggtctgagagttttattttgagggtgttctttgtgggtgagtagtgac 31585608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 41920525 - 41920692
Alignment:
Q  61 ttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgat-----cattcgtttaggtgctcttcgaaatgtgg 155  Q
    |||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||     | |||  |||||||||||||   ||||||    
T  41920525 ttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatcctaaccttcagttaggtgctcttcatcatgtgg 41920624  T
Q  156 cttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgat 222  Q
    || |||||||||||| || | |||||||||| | || |||||||| ||  ||||||||||||||||||    
T  41920625 ctcagcttgggtgttggggtcttggagttttattttgagggtgttttttgtgggtgagtagtgacgat 41920692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 30685912 - 30685798
Alignment:
Q  61 ttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttag 160  Q
    |||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||||||| || | |||||||||| | || |||||||| ||    
T  30685912 ttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatcctttggttaggtgctccttgatatgtggctcag 30685813  T
Q  161 cttgggtgttaggat 175  Q
    |||||||||| ||||    
T  30685812 cttgggtgttgggat 30685798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 5389430 - 5389266
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||| ||||| |||| || |||| ||| ||||||||||| |||||||| |    
T  5389430 tttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctca 5389331  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    ||||||||||| || | | |||||||| | || |||||||||||  |  |||||||||||||||||    
T  5389330 gcttgggtgttggggtctgggagttttattttgagggtgttctt-gtaagtgagtagtgacgatgg 5389266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 6764355 - 6764224
Alignment:
Q  95 gaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttag 193  Q
    ||||| || ||||||||||||||||||||| || |||| |||||||||||||||||||||||| | ||||| |  | || | | |||||||| | || ||    
T  6764355 gaagggcgtgaggtttgtgatagctgcatggtccttcggttaggtgctcttcgaaatgtggctcaacttggatactggggtctgggagttttattttcag 6764256  T
Q  194 ggtgttcttcatgggtgagtagtgacgatgga 225  Q
    | |||||||  |||||||||||||||||||||    
T  6764255 gatgttctttgtgggtgagtagtgacgatgga 6764224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 24684493 - 24684390
Alignment:
Q  53 agttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatg 152  Q
    ||||||||||| ||  ||||| |||| |||||||||| ||| | ||||||||||||| |||  || ||||||||| |||| | |||||||||||||||||    
T  24684493 agttggtttttgggcttttgttttgtgctctttcggtggatcggaggtcgcgaggtt-gtggaagatgcatgatccttcggtcaggtgctcttcgaaatg 24684395  T
Q  153 tggct 157  Q
    |||||    
T  24684394 tggct 24684390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 8255099 - 8255264
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    |||||||||||||| |||| |||||||||| ||| | ||||||||||||||||||||||||| |||||  ||  |||||||||||||| ||||||||| |    
T  8255099 tttttgggctttgttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctca 8255198  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    |||||||||||||| | |  ||||||| | || |||||||||||  ||||||||||||||||||||    
T  8255199 gcttgggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagtagtgacgatgg 8255264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 8268517 - 8268682
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    |||||||||||||| |||| |||||||||| ||| | ||||||||||||||||||||||||| |||||  ||  |||||||||||||| ||||||||| |    
T  8268517 tttttgggctttgttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctca 8268616  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    |||||||||||||| | |  ||||||| | || |||||||||||  ||||||||||||||||||||    
T  8268617 gcttgggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagtagtgacgatgg 8268682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 30964513 - 30964609
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggc 156  Q
    |||||||| |||||||||| |||||| ||| | | | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30964513 tttttgggttttgtgttgtgctcttttggtggttcggaggtcgcgaggtttgtgatagctgcatgatcattcggttaggtgctcttcgaaatgtggc 30964609  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 30167573 - 30167412
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    |||||||| |||||||||| |||||||||| |   | |||||||||||||| |||||||||||||| | |||| ||| | |||||||||||||||||  |    
T  30167573 tttttggggtttgtgttgtgctctttcggtggtccggaggtcgcgaggtttatgatagctgcatgacccttcggttaagcgctcttcgaaatgtggccca 30167474  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacg 220  Q
     |||||||||| || | | |||||||| | || |||||||||||  ||||||||| ||||||    
T  30167473 acttgggtgttggggtatgggagttttattttgagggtgttctttgtgggtgagtggtgacg 30167412  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 214
Target Start/End: Original strand, 4305797 - 4305951
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||| ||||||||||||| |||||| ||| |     ||||||| |||||||||||| |||||||||| |||| | |||||||||||| ||||||||| |    
T  4305797 tttttaggctttgtgttgtgctcttttggtggtccagaggtcgcaaggtttgtgataactgcatgatccttcggtgaggtgctcttcg-aatgtggctca 4305895  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagta 214  Q
     ||||||| || || ||| |||||||| | || |||||| ||||  ||||||||||    
T  4305896 acttgggtatttgggtttgggagttttattttcagggtgatctttgtgggtgagta 4305951  T

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Target: scaffold0343 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 5777 - 5943
Alignment:
Q  60 tttttgggctttgtgtt-gtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctt 158  Q
    |||||||||||||| || || |||||||||||||| | ||||||| ||||||||||||||| | ||||| |||| |||||||||||||| |||||||||     
T  5777 tttttgggctttgtttttgtgctctttcggtagatcggaggtcgcaaggtttgtgatagctacttgatccttcggttaggtgctcttcgtaatgtggctc 5876  T
Q  159 agcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 224  Q
    |||||||||||| |||| | |||||||| | || |||||||| ||  |||||||||||||| |||||    
T  5877 agcttgggtgttgggatctgggagttttattttgagggtgttttttgtgggtgagtagtgatgatgg 5943  T

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Target: scaffold0068 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 202
Target Start/End: Complemental strand, 35790 - 35640
Alignment:
Q  50 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 149  Q
    |||||||||||||| ||||||| |||||| |||||||||| ||| | ||||| |||| ||||||||||||||||||||  ||| ||||||||||||||||    
T  35790 ttaagttggttttt-gggctttatgttgtgctctttcggtggatcggaggtcacgagatttgtgatagctgcatgatccatcggttaggtgctcttcgaa 35692  T
Q  150 atgtggcttagcttgggtgttaggattttggagtttttctttagggtgttctt 202  Q
    ||| |||| |||||||||||| || | | ||||||||| ||||| ||||||||    
T  35691 atgaggctcagcttgggtgttggggtgtgggagttttt-tttagagtgttctt 35640  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 3117565 - 3117729
Alignment:
Q  60 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 159  Q
    ||||||||||||||||||| ||||||  || | | | ||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||||||||| |    
T  3117565 tttttgggctttgtgttgtgctctttatgtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcgattatgtgctcttcgaaatgtggctca 3117664  T
Q  160 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatg 223  Q
     |||||||||| || | | |||||||| | | ||||||||||||  ||||| ||||| |||||||    
T  3117665 acttgggtgttggggtctgggagttttatttatagggtgttctttgtgggtaagtagagacgatg 3117729  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 10541967 - 10542069
Alignment:
Q  123 tgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacga 221  Q
    ||||| |||| |||||||||||||||||||||||| |||||||||||| || | | | |||||| | |  ||||| |||||  |||||||||||||||||    
T  10541967 tgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtattctttgtgggtgagtagtgacga 10542066  T
Q  222 tgg 224  Q
    |||    
T  10542067 tgg 10542069  T

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