View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_102 (Length: 204)
Name: NF6314_high_102
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_102 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 43867305 - 43867470
Alignment:
| Q |
21 |
gaagcaagagggaaagaggtcaatacgacaagggaaattcattagcaagtgttggacattgtatgaaatagtgtattttataatcagttagaataggctt |
120 |
Q |
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| T |
43867305 |
gaagcaagagggaaagaggtcaatacgacaagggaaattcattagtaagtgttggacattgtgggaaatagcgtattttataatcatttggaacaggcta |
43867404 |
T |
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| Q |
121 |
ggctccaagcaatatgggcagtaaacatcgagagtgtgtatagtagttgagccatcgcgaagagat |
186 |
Q |
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| T |
43867405 |
ggctccaagtaatataggcagtgaacatcgagagtgtgtatagtggttgagccatcgcgaagagat |
43867470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 43863876 - 43863978
Alignment:
| Q |
84 |
tgaaatagtgtattttataatcagttagaataggcttggctccaagcaatatgggcagtaaacatcgagagtgtgtatagtagttgagccatcgcgaaga |
183 |
Q |
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| T |
43863876 |
tgaaataacgtattttataatcattttgaataggcttggctccaaggaatatgggcagtaaacatcgagagtgtgtatagtggttgagccatcgcgaaga |
43863975 |
T |
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| Q |
184 |
gat |
186 |
Q |
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||| |
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| T |
43863976 |
gat |
43863978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 43874986 - 43875149
Alignment:
| Q |
21 |
gaagcaagagggaaagaggtcaatacgacaagggaaattcattagcaagtgttggacattgtatgaaatagtgtattttataatcagttagaataggctt |
120 |
Q |
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|||||||||||||||||||||||||| |||||||| || |||||| |||||||||| ||||| || |||| ||||||||||| | || ||||| ||| |
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| T |
43874986 |
gaagcaagagggaaagaggtcaatacaacaagggatatccattagtaagtgttggatattgtgtgtgatagcatattttataataatttggaatatactt |
43875085 |
T |
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| Q |
121 |
ggctccaagcaatatgggcagtaaacatcgagagtgtgtatagtagttgagccatcgcgaagagat |
186 |
Q |
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| T |
43875086 |
ggctcaatgtaatatcggcagtcaacatc--gagtgtgtatagtggttgagccatcgcaaagagat |
43875149 |
T |
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