View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_high_12 (Length: 578)

Name: NF6314_high_12
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_high_12
NF6314_high_12
[»] chr7 (11 HSPs)
chr7 (18-561)||(39975077-39975608)
chr7 (203-470)||(14966294-14966564)
chr7 (203-470)||(15395766-15396036)
chr7 (198-470)||(46269837-46270111)
chr7 (203-568)||(47249347-47249698)
chr7 (227-470)||(31187100-31187346)
chr7 (476-568)||(46270102-46270194)
chr7 (491-561)||(31187352-31187422)
chr7 (407-435)||(5640624-5640652)
chr7 (516-568)||(14966245-14966297)
chr7 (516-568)||(15395717-15395769)
[»] chr1 (15 HSPs)
chr1 (204-470)||(50547698-50547967)
chr1 (203-367)||(26114624-26114789)
chr1 (203-470)||(35067395-35067666)
chr1 (203-372)||(43626447-43626616)
chr1 (198-470)||(10887827-10888103)
chr1 (387-470)||(26114777-26114860)
chr1 (318-470)||(28791950-28792104)
chr1 (298-470)||(32295766-32295937)
chr1 (406-568)||(42093247-42093394)
chr1 (476-568)||(43626691-43626783)
chr1 (481-561)||(35067319-35067399)
chr1 (410-470)||(43626641-43626700)
chr1 (317-371)||(42093190-42093244)
chr1 (488-568)||(50547615-50547695)
chr1 (516-568)||(28792135-28792187)
[»] chr8 (9 HSPs)
chr8 (212-470)||(34660355-34660614)
chr8 (198-470)||(5345012-5345285)
chr8 (198-463)||(44997032-44997299)
chr8 (215-470)||(43097176-43097433)
chr8 (298-470)||(40521660-40521834)
chr8 (290-459)||(36833545-36833716)
chr8 (406-470)||(42279473-42279533)
chr8 (480-561)||(36833458-36833539)
chr8 (407-435)||(31382653-31382681)
[»] chr3 (14 HSPs)
chr3 (197-470)||(8601583-8601858)
chr3 (319-470)||(38341981-38342133)
chr3 (220-352)||(38342127-38342259)
chr3 (346-470)||(46808539-46808663)
chr3 (298-470)||(39349715-39349889)
chr3 (300-470)||(43726154-43726326)
chr3 (351-439)||(3526359-3526449)
chr3 (387-470)||(51898663-51898749)
chr3 (469-568)||(42724583-42724682)
chr3 (203-264)||(43726348-43726410)
chr3 (488-568)||(38341898-38341978)
chr3 (406-470)||(42724666-42724728)
chr3 (516-568)||(39349632-39349684)
chr3 (487-561)||(46808462-46808537)
[»] chr4 (10 HSPs)
chr4 (239-470)||(41362224-41362457)
chr4 (286-492)||(5955303-5955511)
chr4 (298-470)||(43702755-43702929)
chr4 (298-470)||(30843131-30843305)
chr4 (317-470)||(18542496-18542651)
chr4 (406-470)||(47476555-47476619)
chr4 (317-472)||(26939097-26939252)
chr4 (318-435)||(3425472-3425591)
chr4 (407-470)||(53668159-53668221)
chr4 (407-435)||(35421365-35421393)
[»] chr5 (7 HSPs)
chr5 (203-470)||(29359550-29359819)
chr5 (197-472)||(10016661-10016939)
chr5 (298-470)||(38366455-38366629)
chr5 (298-568)||(6660416-6660673)
chr5 (203-441)||(35335983-35336225)
chr5 (317-441)||(36340554-36340680)
chr5 (516-568)||(35335867-35335919)
[»] chr2 (6 HSPs)
chr2 (203-568)||(3406557-3406910)
chr2 (45-135)||(10995092-10995180)
chr2 (407-470)||(9676529-9676591)
chr2 (407-435)||(31074926-31074954)
chr2 (396-440)||(34319113-34319157)
chr2 (407-435)||(35740158-35740186)
[»] chr6 (4 HSPs)
chr6 (396-470)||(6941188-6941262)
chr6 (203-371)||(6941255-6941423)
chr6 (396-440)||(13286600-13286644)
chr6 (407-472)||(10901329-10901393)


Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Complemental strand, 39975608 - 39975077
Alignment:
Q  18 acatttacttcctgtcactggcaacaccaattgaat--ggtcgaattgaagtaggaaggaggggggtgttaacaaaattaaataacctcacctaccttct 115  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39975608 acatttacttcctgtcagtggcaacaccaattgaatatggtcgaattgaagtaggaaggaggggggtgctaacaaaattaaataacctcacctaccttct 39975509  T
Q  116 attcttgcctacattacattctctggttttctagttttgctannnnnnnnnnnnaggaaaattattagactattacttttccatgcatttcctctcgcgc 215  Q
    |||||||||||||||||||||||||||||| |||||||||||            ||||||||||||||||||||||||||||||| |||||||||||||     
T  39975508 attcttgcctacattacattctctggttttttagttttgctattttttttttg-aggaaaattattagactattacttttccatgtatttcctctcgcgt 39975410  T
Q  216 cctattttttcctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaattttggcacttcagcat 315  Q
     ||||||||||||||||||||| |||||| |||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||||||||| ||    
T  39975409 tctattttttcctaaaatactcctagtccagattatataatttggaaccgtttcgaaatgtacattccagaatgttttgtgaattttggcacttcagtat 39975310  T
Q  316 gctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacac--tagagaatttatggattctaaaatccaaaaggtgtaaat 413  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||   ||||||||||| | ||||||||||||    
T  39975309 gctgatggatgaagatgtaagttatgaatagatggatccggattatataatccgaacactttagagaatttccagattctaaaattcgaaaggtgtaaat 39975210  T
Q  414 caccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataattccagattatataatccggaatcttataaatctgtccgaattt 513  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||               |||||||||||||||||||||||||||||||||| ||||    
T  39975209 caccccgttgaaagtcaacaaaagggggtgatgaatgatggtttcg---------------gattatataatccggaatcttataaatctgtccggattt 39975125  T
Q  514 attaatccggaatgcattagtaaagagggagaaaccatctattttggc 561  Q
    ||||||||| ||||||| |||||||||||||||||||||| |||||||    
T  39975124 attaatccgaaatgcatcagtaaagagggagaaaccatctgttttggc 39975077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 203 - 470
Target Start/End: Complemental strand, 14966564 - 14966294
Alignment:
Q  203 tttcctctcgcgccctattttttc-ctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaattt 301  Q
    ||||||| |||||||||||||||  | ||||||| | |||||||||||||||||  | ||||  |||   ||| || | |||| |||||||||||  |||    
T  14966564 tttcctcgcgcgccctattttttttccaaaatacccctagtccggattatataacccagaacaattccagaatatataatccagaatgttttgtggtttt 14966465  T
Q  302 tggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacact--agagaatttatggattctaaaatc 399  Q
    |||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |  |||||||||   |||| |||||||    
T  14966464 tggcacttcatcatgctgatggatgaagatgtaagttatgaataaatggatccggattatacaatccgaacaatttagagaatttccagattataaaatc 14966365  T
Q  400 caaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  14966364 caaaaggtgtaaatcaccctgttgaaagtcaacaaaagggggtggtgaatgatggttccgcattatataat 14966294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 203 - 470
Target Start/End: Complemental strand, 15396036 - 15395766
Alignment:
Q  203 tttcctctcgcgccctattttttc-ctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaattt 301  Q
    ||||||| |||||||||||||||  | ||||||| | |||||||||||||||||  | ||||  |||   ||| || | |||| |||||||||||  |||    
T  15396036 tttcctcgcgcgccctattttttttccaaaatacccctagtccggattatataacccagaacaattccagaatatataatccagaatgttttgtggtttt 15395937  T
Q  302 tggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacact--agagaatttatggattctaaaatc 399  Q
    |||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |  |||||||||   |||| |||||||    
T  15395936 tggcacttcatcatgctgatggatgaagatgtaagttatgaataaatggatccggattatacaatccgaacaatttagagaatttccagattataaaatc 15395837  T
Q  400 caaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  15395836 caaaaggtgtaaatcaccctgttgaaagtcaacaaaagggggtggtgaatgatggttccgcattatataat 15395766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 198 - 470
Target Start/End: Original strand, 46269837 - 46270111
Alignment:
Q  198 atgcatttcctctcgcgccctatttttt-cctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtg 296  Q
    |||| ||| ||| ||||||||||||||| || ||||||| | |||||||||||||||||| || |||  ||| | ||| || | ||   |||||| ||||    
T  46269837 atgccttttctcgcgcgccctatttttttcccaaaatacccctagtccggattatataatccgaaactattccggaatatataatctggaatgttatgtg 46269936  T
Q  297 aattttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacact--agagaatttatggattcta 394  Q
      ||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| | |||||||| |  |||||||||  ||||| ||    
T  46269937 gtttttggcacttcatcatgctgatagatgaagatgtaagttatgaatagatggatccggattataca-tccgaacaatttagagaatttccggattata 46270035  T
Q  395 aaatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    |||||  ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  46270036 aaatctgaaaggtgtaaatcacccagttgaaagtcaacaaaagggggtggtgaatgatggttccgaattatataat 46270111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 203 - 568
Target Start/End: Complemental strand, 47249698 - 47249347
Alignment:
Q  203 tttcctctcgcgccctattttttcctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaatttt 302  Q
    ||||||| ||||  |||||||||   ||||||| | |||||||||||||||||| ||||||| ||| | ||| || | |||  ||| |||||||  ||||    
T  47249698 tttcctcgcgcgttctattttttttcaaaatacccctagtccggattatataatccggaaccattccggaatatataatccggaatattttgtggttttt 47249599  T
Q  303 ggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaaca--ctagagaatttatggattctaaaatcc 400  Q
    ||||||||| |||||||||||| ||| |||||||||||||||||||||||||| |||||| ||||||||||   ||||||||||   |||| ||||||||    
T  47249598 ggcacttcatcatgctgatggacgaagatgtaagttatgaatagatggatccgaattatacaatccgaacaatttagagaattttcagattataaaatcc 47249499  T
Q  401 aaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataattccagattatataatccggaatcttataaa 500  Q
     |||||| ||| ||||| || ||||||||||||||| |||||| ||||||||||||| |               |||||||||||||||||||| |||||    
T  47249498 gaaaggtataagtcaccgcggtgaaagtcaacaaaa-ggggtggtgaatgatggttctg---------------gattatataatccggaatctcataaa 47249415  T
Q  501 tctgtccgaatttattaatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    |||||||||| ||  ||||||||||||||| |||| ||||| |||| |||||| |||| |||||||||    
T  47249414 tctgtccgaaatttataatccggaatgcatcagtacagaggcagaagccatctgtttttgctgagcct 47249347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 227 - 470
Target Start/End: Original strand, 31187100 - 31187346
Alignment:
Q  227 ctaaaatactcgtagtccggattatataattcggaa-ccgttctgaaatgtacattccataatgttttgtgaattttggcacttcagcatgctgatggat 325  Q
    ||||||||| | |||||||||||||||||| ||||| || ||| | ||| || ||||   ||||||||||| |||||||||||||| || ||||||||||    
T  31187100 ctaaaatacccttagtccggattatataatccggaaaccattccggaatataaattctggaatgttttgtggattttggcacttcatcaggctgatggat 31187199  T
Q  326 gaatatgtaagttatgaatagatggatccggattatataatccgaaca--ctagagaatttatggattctaaaatccaaaaggtgtaaatcaccccgttg 423  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||   |||| |||||  ||||| || ||| ||||  |||||||||||| | |||    
T  31187200 gaagatgtaagttatgaatagatggatccggattatataatccgaacattttagataatttccggattatataattcaaatagtgtaaatcacctcattg 31187299  T
Q  424 aaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||    
T  31187300 aaagtcaacaaaagggtatggtgaacgatggttccggattatataat 31187346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 568
Target Start/End: Original strand, 46270102 - 46270194
Alignment:
Q  476 attatataatccggaatcttataaatctgtcc-gaatttattaatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||| |||| | ||| ||||  ||||| ||||||||||||||    
T  46270102 attatataatccggaatctcataaatctgtccggaattta-taatctggaatgcatcagtacaaaggcagaagtcatctgttttggctgagcct 46270194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 561
Target Start/End: Original strand, 31187352 - 31187422
Alignment:
Q  491 atcttataaatctgtccgaatttattaatccggaatgcattagtaaagagggagaaaccatctattttggc 561  Q
    |||||||||||||||| | ||||  ||||||||||||||| |||| ||||| |||| |||||| |||||||    
T  31187352 atcttataaatctgtctggattttataatccggaatgcatcagtacagaggcagaagccatctgttttggc 31187422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 435
Target Start/End: Complemental strand, 5640652 - 5640624
Alignment:
Q  407 tgtaaatcaccccgttgaaagtcaacaaa 435  Q
    |||||||||||||||||||||||||||||    
T  5640652 tgtaaatcaccccgttgaaagtcaacaaa 5640624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 568
Target Start/End: Complemental strand, 14966297 - 14966245
Alignment:
Q  516 taatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    ||||||||||||||| |||| ||||| |||| |||||| |||| |||||||||    
T  14966297 taatccggaatgcatcagtacagaggcagaagccatctgtttttgctgagcct 14966245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 568
Target Start/End: Complemental strand, 15395769 - 15395717
Alignment:
Q  516 taatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    ||||||||||||||| |||| ||||| |||| |||||| |||| |||||||||    
T  15395769 taatccggaatgcatcagtacagaggcagaagccatctgtttttgctgagcct 15395717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 204 - 470
Target Start/End: Complemental strand, 50547967 - 50547698
Alignment:
Q  204 ttcctctcgcgccctatttttt-cctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaatttt 302  Q
    |||||| ||||||||||||||| || |||||||   || | ||||||||||||||||||||| ||||||||| || | |||  ||||||||||| |||||    
T  50547967 ttcctcgcgcgccctatttttttcccaaaatacctctaattcggattatataattcggaaccattctgaaatatataatccggaatgttttgtggatttt 50547868  T
Q  303 ggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaaca--ctagagaatttatggattctaaaatcc 400  Q
    |||||||||  || |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||  ||||| ||||||||    
T  50547867 ggcacttcattatactgatggatgaagatgtaagttatgaatagatggatccggattatacaatccgaacaatttagagaattttcggattataaaatcc 50547768  T
Q  401 aaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
     |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50547767 gaaaggtgtaaatcaccccattgaaagtcaacaaaagggggtggtgaatgatggttccggattatataat 50547698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 203 - 367
Target Start/End: Original strand, 26114624 - 26114789
Alignment:
Q  203 tttcctctcgcgccctattttttcct-aaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaattt 301  Q
    ||||||| | ||||||||||||| || ||||||| | |||| ||||||||||||| ||||||| ||||| ||| || | ||||||||||||||||  |||    
T  26114624 tttcctcgcacgccctatttttttctcaaaatacccctagttcggattatataatccggaaccattctggaatatataatccataatgttttgtggtttt 26114723  T
Q  302 tggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatc 367  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  26114724 tggcacttcatcatgctgatggatgaagatgtaagttatgaatagatggatccggattataaaatc 26114789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 203 - 470
Target Start/End: Complemental strand, 35067666 - 35067395
Alignment:
Q  203 tttcctctcgcgccctatttttt-cctaaaatactcgtagtccggattatataattcggaaccgttctga-aatgtacattccataatgttttgtgaatt 300  Q
    ||||||| ||||||||||||||| || ||||||| | ||||||||||||  |||| ||||||| ||   | ||| || |||||| ||| |||| || |||    
T  35067666 tttcctcgcgcgccctatttttttcccaaaatacccctagtccggattacctaatccggaaccatttccagaatataaattccagaatattttatggatt 35067567  T
Q  301 ttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaaca--ctagagaatttatggattctaaaat 398  Q
    ||||||||||| ||   ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||   || |  ||||  ||||| || |||    
T  35067566 ttggcacttcatcaccttgatggatgaagatgtgagtaatgaatagatggatccggattatataatccgaacattttatatcatttccggattatataat 35067467  T
Q  399 ccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
     | ||  |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| |||||    
T  35067466 tcgaatagtgtaaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgatggttccggattacataat 35067395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 203 - 372
Target Start/End: Original strand, 43626447 - 43626616
Alignment:
Q  203 tttcctctcgcgccctattttttcctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaatttt 302  Q
    ||||||| ||||||||||||||||| ||||||| | |||||||||||||||||| ||||| | |||   ||| || | |||  |||||||||||  ||||    
T  43626447 tttcctcgcgcgccctattttttcccaaaatacccctagtccggattatataatccggaaacattccagaatatataatccggaatgttttgtggttttt 43626546  T
Q  303 ggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaac 372  Q
    ||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||    
T  43626547 ggcacttcatcatgctgatggatgaagatgtacgttatgaatagatggattcggattatacaatccgaac 43626616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 198 - 470
Target Start/End: Complemental strand, 10888103 - 10887827
Alignment:
Q  198 atgcatttcctctcgcgccctatttttt-cctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtg 296  Q
    |||| ||||||| |||||| |||||||| || |||||||   |||||||||||| ||||| || |||| ||||| ||| |  |||||  | |  || |||    
T  10888103 atgcctttcctcgcgcgccatatttttttcccaaaataccattagtccggattacataatccgaaaccattctggaatattaattccggatttattcgtg 10888004  T
Q  297 aattttggcacttcagc-atgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacac--tagagaatttatggattct 393  Q
     |||||||||||||| | |  || ||||||||  |||  ||||||||||| ||| || |||||||||||||||||| |   |||| || ||  ||||| |    
T  10888003 gattttggcacttcatccactctaatggatgatgatgagagttatgaatatatgaattcggattatataatccgaaaagggtagataacttccggattat 10887904  T
Q  394 aaaatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    | ||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  10887903 ataatccgaaaagtgtaaatcaccccgttgaaagtcaacaaaagggggtggtgaacgatggttctggattatataat 10887827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 387 - 470
Target Start/End: Original strand, 26114777 - 26114860
Alignment:
Q  387 ggattctaaaatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||| |||||||  |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||    
T  26114777 ggattataaaatctgaaagatgtaaatcaccccgttgaaagtcaacaaaagggagtggtgaatgatggttccagattatataat 26114860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 318 - 470
Target Start/End: Original strand, 28791950 - 28792104
Alignment:
Q  318 tgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacactagaga--atttatggattctaaaatccaaaaggtgtaaatca 415  Q
    ||||||||||| |||| ||| ||||||||||| || |||||||||||||||||||| |  | |  ||||  ||||| || ||||| ||  ||||||||||    
T  28791950 tgatggatgaagatgtcagtgatgaatagatgaattcggattatataatccgaacattttatatcatttccggattatataatccgaatagtgtaaatca 28792049  T
Q  416 ccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    |||||||||||||||||||||| | ||| |||| || |||||| |||||||||||    
T  28792050 ccccgttgaaagtcaacaaaagtgagtggtgaacgacggttccagattatataat 28792104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 298 - 470
Target Start/End: Original strand, 32295766 - 32295937
Alignment:
Q  298 attttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacactagaga--atttatggattctaa 395  Q
    |||||||||||||| ||  || ||||||||| |||||| | ||||||||||| |||||||||||||||||| |||| |  | |  ||||  ||||| ||     
T  32295766 attttggcacttcatcaccctcatggatgaagatgtaaatgatgaatagatgaatccggattatataatcccaacattttatatcatttccggattata- 32295864  T
Q  396 aatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
      ||  ||  |||||||||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||    
T  32295865 --tctgaatagtgtaaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgacggttccggattatataat 32295937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 406 - 568
Target Start/End: Original strand, 42093247 - 42093394
Alignment:
Q  406 gtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataattccagattatataatccggaatcttataaatctgt 505  Q
    |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||               |||||||||||||  | ||||| ||||    
T  42093247 gtgtaaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgatggttccggatt---------------atataatccggaaagtgataaacctgt 42093331  T
Q  506 ccgaatttattaatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    |||||||   ||||||||||||||| |||| ||||| |||| |||||| ||||||||||||||    
T  42093332 ccgaattatataatccggaatgcatcagtacagaggcagaagccatctgttttggctgagcct 42093394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 568
Target Start/End: Original strand, 43626691 - 43626783
Alignment:
Q  476 attatataatccggaatcttataaatctgtcc-gaatttattaatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    ||||||||||||||||||  |||||||||||| ||||||| |||| |||||||||| |||| ||||| |||| |||||| |||| | |||||||    
T  43626691 attatataatccggaatcacataaatctgtccggaattta-taattcggaatgcatcagtacagaggcagaagccatctgtttttgttgagcct 43626783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 561
Target Start/End: Complemental strand, 35067399 - 35067319
Alignment:
Q  481 ataatccggaatcttataaatctgtccgaatttattaatccggaatgcattagtaaagagggagaaaccatctattttggc 561  Q
    |||||||||||| ||||||||||||||| |||   ||||||||| ||||| |||| ||||| |||| |||||| |||||||    
T  35067399 ataatccggaatgttataaatctgtccggattatataatccggactgcatcagtacagaggcagaagccatctgttttggc 35067319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 470
Target Start/End: Original strand, 43626641 - 43626700
Alignment:
Q  410 aaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||||||| |||||||||||| |||||||| || ||||||||||||||| ||||||||||    
T  43626641 aaatcacccagttgaaagtcaataaaagggg-tggtgaatgatggttccgaattatataat 43626700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 42093190 - 42093244
Alignment:
Q  317 ctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaa 371  Q
    |||||||||||| |||| ||| ||||||||||| || ||||||||||||||||||    
T  42093190 ctgatggatgaagatgtcagtaatgaatagatgaattcggattatataatccgaa 42093244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 568
Target Start/End: Complemental strand, 50547695 - 50547615
Alignment:
Q  488 ggaatcttataaatctgtccg-aatttattaatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    ||||||| |||||||||| || ||||||| |||||||||||||| |||| ||||| |||| | |||| |||| |||||||||    
T  50547695 ggaatctcataaatctgttcggaatttat-aatccggaatgcatcagtacagaggcagaagctatctgtttttgctgagcct 50547615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 568
Target Start/End: Original strand, 28792135 - 28792187
Alignment:
Q  516 taatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    ||||||||||||||| |||| ||||| |||| |||||| |||||| |||||||    
T  28792135 taatccggaatgcatcagtacagaggcagaagccatctgttttggttgagcct 28792187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 212 - 470
Target Start/End: Original strand, 34660355 - 34660614
Alignment:
Q  212 gcgccctattttttcctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaattttggcacttca 311  Q
    |||||||||||||||| ||||||| | ||||||| |||||||||| ||||||| ||| | ||| || | |||  |||||||||||  |||||||||||||    
T  34660355 gcgccctattttttcccaaaatacccctagtccgaattatataatccggaaccattccggaatatataatccggaatgttttgtggtttttggcacttca 34660454  T
Q  312 gcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaaca--ctagagaatttatggattctaaaatccaaaaggtgt 409  Q
     |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||  | ||| |||||||  ||||||||    
T  34660455 tcatgctgatggatgaagatgtaagttatgaatagatggatccggattatacaatccgaacagtttagagaatttccgaattataaaatctgaaaggtgt 34660554  T
Q  410 aaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  34660555 aaatcaccccgttgaaagtaaacaaaa-ggggtggtgaatgatggttccggattatataat 34660614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 198 - 470
Target Start/End: Complemental strand, 5345285 - 5345012
Alignment:
Q  198 atgcatttcctctcgcgccctattttttcctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtga 297  Q
    |||| ||||| | ||||||||||||||||| ||||||| | | |||||||||||||||| |||||||  ||   ||| |||||||   || ||||| ||     
T  5345285 atgcctttccccgcgcgccctattttttcccaaaatacccttggtccggattatataatccggaaccactcctgaatatacattctggaaagttttatgg 5345186  T
Q  298 attttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacac--tagagaatttatggattctaa 395  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| |  | |||||||| |||||| |||    
T  5345185 attttggcacttcatcatgctgatggatgaagatgtaagttatgaataaatggatccggattatataatctgaacgctttcgagaatttttggattataa 5345086  T
Q  396 aatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  5345085 aatccgaaaggtgtaaatca-cccgttgaaagtcaacaaaagggggtagtgaatgatggttccggattatataat 5345012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 198 - 463
Target Start/End: Original strand, 44997032 - 44997299
Alignment:
Q  198 atgcatttcctctcgcgccctattttttcctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtga 297  Q
    |||| ||||||| |||||||||||||| || ||||||| | |||||||||||||||||| ||||||| |||   ||  || | |||  |||||||||||     
T  44997032 atgcctttcctcgcgcgccctatttttccccaaaatacccctagtccggattatataatccggaaccattccataacatataatccggaatgttttgtgg 44997131  T
Q  298 attttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaaca--ctagagaatttatggattctaa 395  Q
     ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||   ||||||||||  | ||| |||    
T  44997132 tttttggcacttcatcatgttgatggatgaagatgtaagttatgaatagatggatccggattatacaatccaaacaatttagagaatttccgaattataa 44997231  T
Q  396 aatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggatt 463  Q
    ||||  |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||    
T  44997232 aatctgaaaggtgtaaatcaccccgttgaaagtcaacaaaagagggcggtgaatgatggttccagatt 44997299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 215 - 470
Target Start/End: Complemental strand, 43097433 - 43097176
Alignment:
Q  215 ccctattttttcctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaattttggcacttcagca 314  Q
    ||||||||||||| ||||||| | | ||||||||||| |||| ||||||| ||| | ||| || | | |  ||| ||||| |  ||||||||||||| ||    
T  43097433 ccctattttttcccaaaatacccttggtccggattatctaatccggaaccattccggaatatataattcggaatattttgcggtttttggcacttcatca 43097334  T
Q  315 tgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacac--tagagaatttatggattctaaaatccaaaaggtgtaaa 412  Q
    |||||||| ||||| |||||||||||||||||||| |||||||||||| |||||||||||  ||||||||||  ||||| |||||||  |||||||||||    
T  43097333 tgctgatgaatgaagatgtaagttatgaatagatgaatccggattatacaatccgaacactttagagaatttccggattataaaatctgaaaggtgtaaa 43097234  T
Q  413 tcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||  |||||||||||||||||||||| || |||||||||||||| |||||||||||    
T  43097233 tcacatcgttgaaagtcaacaaaaggggatggtgaatgatggttccagattatataat 43097176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 298 - 470
Target Start/End: Original strand, 40521660 - 40521834
Alignment:
Q  298 attttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacactagaga--atttatggattctaa 395  Q
    |||||||||||||| ||   ||||||||||| |||| ||| ||||||||||| |||||||||||||||| |||||| |  | |  ||||   |||| ||     
T  40521660 attttggcacttcatcaccttgatggatgaagatgtcagtgatgaatagatgaatccggattatataattcgaacattttatatcattttgagattatat 40521759  T
Q  396 aatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||| ||  |||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||    
T  40521760 aatccgaatagtgtaaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgatggttccggattatataat 40521834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 459
Target Start/End: Complemental strand, 36833716 - 36833545
Alignment:
Q  290 ttttgtgaattttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaaca--ctagagaatttatg 387  Q
    ||||||| ||||||| |||||| ||   ||||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||   || |  ||||  |    
T  36833716 ttttgtggattttggaacttcatcaccatgatggatgaagatgtcagtaatgaatagatggatccgaattatataatccgaacattttatatcatttccg 36833617  T
Q  388 gattctaaaatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccg 459  Q
    |||| || ||||  ||  |||||||||||||| |||||||| |||||||| || || || | ||||||||||    
T  36833616 gattatataatctgaatagtgtaaatcaccccattgaaagttaacaaaagtggatggtggacgatggttccg 36833545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 470
Target Start/End: Complemental strand, 42279533 - 42279473
Alignment:
Q  406 gtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||||||||||||||||||||||||||    |||| | |||| |||| ||||||||||||||||    
T  42279533 gtgtaaatcaccccgttgaaagtcaaca----gggggggtgaacgatgattccggattatataat 42279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 561
Target Start/End: Complemental strand, 36833539 - 36833458
Alignment:
Q  480 tataatccggaatcttataaatctgtccgaatttattaatccggaatgcattagtaaagagggagaaaccatctattttggc 561  Q
    ||||||| ||||| ||||||||||||||| ||||  |||| |||| | ||| |||| ||||  |||| ||||||||||||||    
T  36833539 tataatcgggaatgttataaatctgtccggattttataattcggactacatcagtacagagacagaagccatctattttggc 36833458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 435
Target Start/End: Original strand, 31382653 - 31382681
Alignment:
Q  407 tgtaaatcaccccgttgaaagtcaacaaa 435  Q
    |||||||||||||||||||||||||||||    
T  31382653 tgtaaatcaccccgttgaaagtcaacaaa 31382681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 197 - 470
Target Start/End: Original strand, 8601583 - 8601858
Alignment:
Q  197 catgcatttcctctcgcgccctattttttcct-aaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgt 295  Q
    ||||| ||||||| |||||| ||||||||  | ||||||| | |||||||||||||||||| ||||||| ||    ||| || | |||  ||||||||||    
T  8601583 catgcttttcctcgcgcgccttatttttttttcaaaatacccctagtccggattatataatccggaaccatttcagaatatataatccggaatgttttgt 8601682  T
Q  296 gaattttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaaca--ctagagaatttatggattct 393  Q
    |  ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||  ||||| |    
T  8601683 ggtttttggcacttcatcatgctggtggatgaagatgtaagttatgaatagatggatccggattatacaatccgaacaatttagagaatttccggattat 8601782  T
Q  394 aaaatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||||| ||| || ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8601783 aaaatccgaaa-gtataaatcacctcgttgaaagtcaacaaaagggggtggtgaatgatggttccggattatataat 8601858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 319 - 470
Target Start/End: Complemental strand, 38342133 - 38341981
Alignment:
Q  319 gatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacact--agagaatttatggattctaaaatccaaaaggtgtaaatcac 416  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |  |||||||||  ||||| |||||| | |||||||||||||||    
T  38342133 gatggatgaagatgtaagttatgaataggtggatccggattatacaatccgaacaatttagagaatttc-ggattataaaattcgaaaggtgtaaatcac 38342035  T
Q  417 cccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38342034 cccgttgaaagtcaacaaaagggggtggtgaatgatggttccggattatataat 38341981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 220 - 352
Target Start/End: Complemental strand, 38342259 - 38342127
Alignment:
Q  220 ttttttcctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaattttggcacttcagcatgctg 319  Q
    |||||| ||||||||| | |||||||||||||||||| ||||||| ||| | ||| || | |||| |||||||||||  ||||||||||||| |||||||    
T  38342259 tttttttctaaaatacccctagtccggattatataatccggaaccattccggaatatataatccagaatgttttgtggtttttggcacttcatcatgctg 38342160  T
Q  320 atggatgaatatgtaagttatgaatagatggat 352  Q
    ||||||||| |||||||||||||||||||||||    
T  38342159 atggatgaagatgtaagttatgaatagatggat 38342127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 346 - 470
Target Start/End: Complemental strand, 46808663 - 46808539
Alignment:
Q  346 gatggatccggattatataatccgaacact--agagaatttatggattctaaaatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtg 443  Q
    |||||||||| |||||| |||||||||| |  |||||||||  ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  46808663 gatggatccgaattatacaatccgaacaatttagagaatttcaggattataaaatccaaaaggtgtaaatca-cccgttgaaagtcaacaaaa-ggggtg 46808566  T
Q  444 atgaatgatggttccggattatataat 470  Q
     |||||| |||||||||||||||||||    
T  46808565 gtgaatggtggttccggattatataat 46808539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 298 - 470
Target Start/End: Complemental strand, 39349889 - 39349715
Alignment:
Q  298 attttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacactagaga--atttatggattctaa 395  Q
    ||||||| |||||| ||  || ||| ||||| |||| | | ||||||||||| ||||||||||||||||||||||| |  | |  ||||  | ||| ||     
T  39349889 attttggaacttcatcaccctaatgaatgaagatgtcactgatgaatagatgaatccggattatataatccgaacattttatatcatttccgaattatat 39349790  T
Q  396 aatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||| ||  |||||||||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||    
T  39349789 aatccgaatagtgtaaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgacggttccggattatataat 39349715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 300 - 470
Target Start/End: Complemental strand, 43726326 - 43726154
Alignment:
Q  300 tttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacactagaga--atttatggattctaaaa 397  Q
    ||||| |||||| ||  |||||| ||||| |||| ||| ||||||||||| ||||| ||||||||||  ||||  |  | |  ||||  ||||| || ||    
T  43726326 tttggaacttcatcaccctgatgaatgaagatgtcagtaatgaatagatgaatccgaattatataatttgaactttttatatcatttccggattatataa 43726227  T
Q  398 tccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||| ||  |||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||    
T  43726226 tccgaatagtgtaaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgatggttccggattatataat 43726154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 351 - 439
Target Start/End: Original strand, 3526359 - 3526449
Alignment:
Q  351 atccggattatataatccgaacact--agagaatttatggattctaaaatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaaggg 439  Q
    |||||||||||| |||||||||| |  |||||||||  ||||| |||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  3526359 atccggattatacaatccgaacaatttagagaatttccggattataaaatccgaaatgtgtaaatcaccccgttgaaactcaacaaaaggg 3526449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 387 - 470
Target Start/End: Complemental strand, 51898749 - 51898663
Alignment:
Q  387 ggattctaaaatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagg---gggtgatgaatgatggttccggattatataat 470  Q
    ||||| || ||||| ||| |||||||||||||||||||||||||||||||||   ||| | |||| |||| ||||||||||||||||    
T  51898749 ggattatataatccgaaacgtgtaaatcaccccgttgaaagtcaacaaaagggatggggggtgaacgatgattccggattatataat 51898663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 469 - 568
Target Start/End: Complemental strand, 42724682 - 42724583
Alignment:
Q  469 attccagattatataatccggaatcttataaatctgtccgaatttattaatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    ||||||||||||||||| |||||| |  |||| ||||| ||| |   ||||||||| ||||| |||| ||||| |||| |||||| ||||||||||||||    
T  42724682 attccagattatataatgcggaatgtgctaaaactgtcagaactatataatccggactgcatcagtacagaggcagaagccatctgttttggctgagcct 42724583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 43726410 - 43726348
Alignment:
Q  203 tttcctctcgcgccctattttttcct-aaaatactcgtagtccggattatataattcggaacc 264  Q
    ||||||| |||||||||||||||||  ||||||| | |||||||||||||||||| |||||||    
T  43726410 tttcctcgcgcgccctattttttccccaaaatacccttagtccggattatataatccggaacc 43726348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 488 - 568
Target Start/End: Complemental strand, 38341978 - 38341898
Alignment:
Q  488 ggaatcttataaatctgtccg-aatttattaatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    ||||||| |||||||||| || ||||||| |||||||||||||| |||| ||||| |||| |||||| |||| |||||||||    
T  38341978 ggaatctcataaatctgttcggaatttat-aatccggaatgcatcagtacagaggcagaagccatctgtttttgctgagcct 38341898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 470
Target Start/End: Complemental strand, 42724728 - 42724666
Alignment:
Q  406 gtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||| |||||||||||||||||||||||||||||  | |||| |||| |||| |||||||||||    
T  42724728 gtgtagatcaccccgttgaaagtcaacaaaagggg--ggtgaacgatgattccagattatataat 42724666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 516 - 568
Target Start/End: Complemental strand, 39349684 - 39349632
Alignment:
Q  516 taatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    ||||||||||||||| |||| ||||| |||| |||||| ||||||||||||||    
T  39349684 taatccggaatgcatcagtacagaggcagaagccatctgttttggctgagcct 39349632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 561
Target Start/End: Complemental strand, 46808537 - 46808462
Alignment:
Q  487 cggaatcttataaatctgtccgaatttattaatccggaatgcattagtaaagagg-gagaaaccatctattttggc 561  Q
    |||||||| ||||||||||||| | ||  ||||||||||||||| |||| |||||  |||| ||||||||||||||    
T  46808537 cggaatctcataaatctgtccggaatttgtaatccggaatgcatcagtacagaggccagaagccatctattttggc 46808462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 239 - 470
Target Start/End: Complemental strand, 41362457 - 41362224
Alignment:
Q  239 tagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaattttggcacttcagcatgctgatggatgaatatgtaagtt 338  Q
    ||||||||||||||||||  | |||| |||   ||| |||| |||  ||||||||| || ||||| ||||||| |||||||||||||||| |||||||||    
T  41362457 tagtccggattatataatctgaaaccattccagaatatacaatccggaatgttttgcgatttttgccacttcatcatgctgatggatgaagatgtaagtt 41362358  T
Q  339 atgaatagatggatccggattatataatccgaacact--agagaatttatggattctaaaatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaa 436  Q
    |||||||||||||||||||||||| |||| ||||| |  |||||||||  ||||| |||||||| ||||||||||||||||  |||||||||||||||||    
T  41362357 atgaatagatggatccggattatacaatctgaacaatttagagaatttccggattataaaatccgaaaggtgtaaatcacctagttgaaagtcaacaaaa 41362258  T
Q  437 gggggtgatgaatgatggttccggattatataat 470  Q
    ||||||| ||||||||||||||||||||||||||    
T  41362257 gggggtggtgaatgatggttccggattatataat 41362224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 286 - 492
Target Start/End: Original strand, 5955303 - 5955511
Alignment:
Q  286 aatgttttgtgaattttggcacttcagcatgctgatggatgaatatgtaa-gttatgaatagatggatccggattatataatccgaacact--agagaat 382  Q
    |||||||||||  ||||||||||||| |||  ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| |  |||||||    
T  5955303 aatgttttgtggtttttggcacttcatcatcttgatggatgaagatgtaaagttatgaatagatggatccggattatacaatccgaacaatttagagaat 5955402  T
Q  383 ttatggattctaaaatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataattccagattatat 482  Q
    ||  ||||| |||||||| ||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||| ||| || | |||    
T  5955403 tttcggattataaaatccgaaaggtgtaaatcaccctgttgaaagtcaataaaacggggtggtgaatgatggttccggattatataa-tccggaatttat 5955501  T
Q  483 aatccggaat 492  Q
    ||||||||||    
T  5955502 aatccggaat 5955511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 298 - 470
Target Start/End: Original strand, 43702755 - 43702929
Alignment:
Q  298 attttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacactagaga--atttatggattctaa 395  Q
    |||||||||||| | ||  |||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||| |  | |  ||||  | ||| ||     
T  43702755 attttggcacttaatcaccctgatggatgaagatgtcagtaatgaatagatgaatccggattatataatccgaacaatttatatgattttcgtattatat 43702854  T
Q  396 aatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||  ||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||    
T  43702855 aatctgaaaagtgtaaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgatggttccggattatataat 43702929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 298 - 470
Target Start/End: Original strand, 30843131 - 30843305
Alignment:
Q  298 attttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacactagaga--atttatggattctaa 395  Q
    |||||||||||||| ||  |||||||||||| |||| ||| ||||||||||| |||||||||||||||||| |||| |  | |  ||||  ||||| ||     
T  30843131 attttggcacttcatcaccctgatggatgaagatgtcagtgatgaatagatgaatccggattatataatccaaacattttatatcatttccggattatat 30843230  T
Q  396 aatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||| ||  |||||||||||||  ||||||||||||||||||||||| |||| || ||||||||||||||||||    
T  30843231 aatccgaatagtgtaaatcaccctattgaaagtcaacaaaagggggtggtgaacgacggttccggattatataat 30843305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 317 - 470
Target Start/End: Original strand, 18542496 - 18542651
Alignment:
Q  317 ctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacact--agagaatttatggattctaaaatccaaaaggtgtaaatc 414  Q
    |||||||||||   ||| |||||||||||||| ||| ||||||||||||||| || | |  ||| |  ||  ||||| || ||||  ||| |||||||||    
T  18542496 ctgatggatgatggtgtcagttatgaatagatagattcggattatataatccaaaaaatttagatagctttcggattatataatctgaaacgtgtaaatc 18542595  T
Q  415 accccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||    
T  18542596 accccgttgaaagtcaacaaaagggggtggtgaacgatggtttcggattatataat 18542651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 470
Target Start/End: Complemental strand, 47476619 - 47476555
Alignment:
Q  406 gtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||||||||| |||||||||||||||||||| ||||| |||| || ||||||||||||||||||    
T  47476619 gtgtaaatcactccgttgaaagtcaacaaaagtgggtggtgaacgacggttccggattatataat 47476555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 317 - 472
Target Start/End: Complemental strand, 26939252 - 26939097
Alignment:
Q  317 ctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacac--tagagaatttatggattctaaaatccaaaaggtgtaaatc 414  Q
    |||||| ||||  |||| ||||||||||| || | |||||||||||||||||||| |   |||| |  ||  ||||| || ||||| ||| |||||||||    
T  26939252 ctgatgaatgatgatgtcagttatgaatatattgttccggattatataatccgaaaaagttagatagcttccggattatataatccgaaacgtgtaaatc 26939153  T
Q  415 accccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataattc 472  Q
    |||||||||||||||||||||| |||  | |||| |||| ||||||| ||||||||||    
T  26939152 accccgttgaaagtcaacaaaaaggg--ggtgaacgatgattccggactatataattc 26939097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 435
Target Start/End: Original strand, 3425472 - 3425591
Alignment:
Q  318 tgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaa--cactagagaatttatggattctaaaatccaaaaggtgtaaatca 415  Q
    ||||||||||  |||  ||||||||||||||||||||||||||| |||||||||     | || || || |||| | || ||||||||| ||||||||||    
T  3425472 tgatggatgatgatgccagttatgaatagatggatccggattatgtaatccgaaaggtgtggaaaacttttggactatagaatccaaaacgtgtaaatca 3425571  T
Q  416 ccccgttgaaagtcaacaaa 435  Q
    ||||||||||| | ||||||    
T  3425572 ccccgttgaaaattaacaaa 3425591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 470
Target Start/End: Original strand, 53668159 - 53668221
Alignment:
Q  407 tgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    |||||||||||||||||||||||||| |||  ||||||  ||||||| |||||||||| |||||    
T  53668159 tgtaaatcaccccgttgaaagtcaac-aaatagggtgaaaaatgatgattccggattacataat 53668221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 435
Target Start/End: Complemental strand, 35421393 - 35421365
Alignment:
Q  407 tgtaaatcaccccgttgaaagtcaacaaa 435  Q
    |||||||||||||||||||||||||||||    
T  35421393 tgtaaatcaccccgttgaaagtcaacaaa 35421365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 9e-56; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 203 - 470
Target Start/End: Original strand, 29359550 - 29359819
Alignment:
Q  203 tttcctctcgcgccctattttttcctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaatttt 302  Q
    ||||||| ||| ||||||||||||| ||||||| | || |||||||||||||||  |||| |   | | ||| || | |||  |||||||||||  ||||    
T  29359550 tttcctcgcgcaccctattttttcccaaaatacccctaatccggattatataatctggaaacagaccggaatatataatccggaatgttttgtggttttt 29359649  T
Q  303 ggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacact--agagaatttatggattctaaaatcc 400  Q
    || |||||| |||||||||||||||  ||||||||||||||||||||||||| ||||||| |||| ||||| |  ||||||||   ||||| ||||||||    
T  29359650 ggaacttcatcatgctgatggatgatgatgtaagttatgaatagatggatccagattatacaatcggaacaatttagagaattcccggattataaaatcc 29359749  T
Q  401 aaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
     |||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  29359750 gaaaggtgtaaatcatcccgttgaaagtcaacaaaagggggtggtgaatgatggtttcggattatataat 29359819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 197 - 472
Target Start/End: Complemental strand, 10016939 - 10016661
Alignment:
Q  197 catgcatttcctctcgcgccctattttttcct-aaaatactcgtagtccggattatataattcggaaccgttct-gaaatgtacattccataatgttttg 294  Q
    ||||| ||||||| |||||||||||||||||  ||||||| | |||||||||||| ||||| ||| ||| || | | ||| || ||| |  | | |||||    
T  10016939 catgcctttcctcgcgcgccctattttttccccaaaatacccctagtccggattacataatccgggaccattttcggaatataaatttcggattattttg 10016840  T
Q  295 tgaattttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaaca--ctagagaatttatggattc 392  Q
    || |||||| ||||||| ||  |||||||||||| ||||  || |||||||||||||||||||||||||||| ||||||   || |  ||||   ||||     
T  10016839 tggattttgacacttcatcaccctgatggatgaagatgtcggtaatgaatagatggatccggattatataatacgaacattttatatcattt-ccgatta 10016741  T
Q  393 taaaatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataattc 472  Q
    || ||||| ||   |||||||||||| ||||||| |||||||||| ||||| |||| ||| |||||||||||||||||||    
T  10016740 tataatccgaataatgtaaatcaccctgttgaaaatcaacaaaagtgggtggtgaacgattgttccggattatataattc 10016661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 298 - 470
Target Start/End: Complemental strand, 38366629 - 38366455
Alignment:
Q  298 attttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacactagaga--atttatggattctaa 395  Q
    |||||||||||||| ||| |||||||||||| ||||  || ||||||||||| ||| | |||||||||||| |||| |  | |  ||||  | ||| ||     
T  38366629 attttggcacttcatcatcctgatggatgaagatgtcggtgatgaatagatgaatctgaattatataatccaaacattttatatcattttcgaattatat 38366530  T
Q  396 aatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||| | ||  |||||||||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||    
T  38366529 aattcgaatagtgtaaatcaccccgttgaaagtcaacaaaagtgggtggtgaacgacggttccggattatataat 38366455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 298 - 568
Target Start/End: Complemental strand, 6660673 - 6660416
Alignment:
Q  298 attttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacact--agagaatttatggattctaa 395  Q
    |||||||||||||| ||   ||||||||||| |||| ||| ||||||||||| |||||||||||||||| |||||| |  | | |||||  ||||| ||     
T  6660673 attttggcacttcatcaccttgatggatgaagatgtcagtgatgaatagatgaatccggattatataattcgaacattttatataattttcggattatat 6660574  T
Q  396 aatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataattccagattatataatccggaatctt 495  Q
    ||| | |   |||||||||| ||||||||||||||||||||| ||||| |||| || ||||||               ||||||||||||||||||  |     
T  6660573 aattcgactagtgtaaatcatcccgttgaaagtcaacaaaagtgggtggtgaacgacggttcc---------------agattatataatccggaaagtg 6660489  T
Q  496 ataaatctgtccgaatttattaatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    ||||| ||||||| |||   ||||||||||| ||| |||| ||||| |||| |||||| ||||||||||||||    
T  6660488 ataaacctgtccggattatataatccggaattcatcagtacagaggcagaagccatctgttttggctgagcct 6660416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 203 - 441
Target Start/End: Complemental strand, 35336225 - 35335983
Alignment:
Q  203 tttcctctcgcgccctattttttcctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaatttt 302  Q
    ||||||| ||||||||||||||||| | ||||| | ||||||||||||||||||||| | || ||| | ||| |  |||||  | |  || ||| |||||    
T  35336225 tttcctcgcgcgccctattttttcccataatacccctagtccggattatataattcgaacccattccggaatattaattccggatttattcgtgtatttt 35336126  T
Q  303 ggcacttca-gcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaaca--ctagagaatttatggattcta-aaat 398  Q
    |||||||||  ||  |||||||||||  |||  ||||||||||| || | || ||||||||||||||||| |   |||| |  ||  ||||| ||  |||    
T  35336125 ggcacttcatccaccctgatggatgatgatgccagttatgaatatattgttctggattatataatccgaaaaagttagatagcttccggattatattaat 35336026  T
Q  399 ccaaaaggtgtaaatcaccccgttgaaagtcaacaaaaggggg 441  Q
    || |||  |||||||||||||||||||||||||||||||||||    
T  35336025 ccgaaacttgtaaatcaccccgttgaaagtcaacaaaaggggg 35335983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 441
Target Start/End: Complemental strand, 36340680 - 36340554
Alignment:
Q  317 ctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacac--tagagaatttatggattctaaaatccaaaaggtgtaaatc 414  Q
    |||||||||||  |||| ||||||||||| || | |||||||||||||||||||| |   |||| |  ||  ||||| || ||||  ||| |||||||||    
T  36340680 ctgatggatgatgatgtcagttatgaatatattgttccggattatataatccgaaaaacttagatagcttccggattatataatctgaaacgtgtaaatc 36340581  T
Q  415 accccgttgaaagtcaacaaaaggggg 441  Q
    ||| |||||||||||||||||||||||    
T  36340580 acctcgttgaaagtcaacaaaaggggg 36340554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 568
Target Start/End: Complemental strand, 35335919 - 35335867
Alignment:
Q  516 taatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    ||||||||| ||||| |||| ||||| |||| |||||| ||||||||||||||    
T  35335919 taatccggactgcatcagtacagaggcagaagccatctgttttggctgagcct 35335867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 9e-56; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 203 - 568
Target Start/End: Original strand, 3406557 - 3406910
Alignment:
Q  203 tttcctctcgcgccctatttttt--cctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaatt 300  Q
    ||||||| |||||||||||||||  || ||| ||| | ||||||||||||||||||  | |||| |||   ||| || | ||||||||||||||||  ||    
T  3406557 tttcctcgcgcgccctattttttttcccaaactacccctagtccggattatataatctgcaaccattccagaatatataatccataatgttttgtggttt 3406656  T
Q  301 ttggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaacact--agagaatttatggattctaaaat 398  Q
    ||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||| ||||||| |||| ||||| |  |||||||||  ||||| ||||||    
T  3406657 ttggcacttcatcatgttgagggatgaagatgtaagttatgaatagatggatccagattatacaatc-gaacaatttagagaatttccggattataaaat 3406755  T
Q  399 ccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataattccagattatataatccggaatcttata 498  Q
    |  ||| |||||||||||||| ||||||||||||||||||||||| | ||||||||               ||||||||||||||||||||||||| |||    
T  3406756 ctgaaatgtgtaaatcaccccattgaaagtcaacaaaagggggtggtaaatgatgg---------------ttccagattatataatccggaatctcata 3406840  T
Q  499 aatctgtc-cgaatttattaatccggaatgcattagtaaagagggagaaaccatctattttggctgagcct 568  Q
    ||||||||  ||||||| ||||||||||||||| |||| ||||| |||| |||||| |||| |||||||||    
T  3406841 aatctgtctggaattta-taatccggaatgcatcagtacagaggcagaagccatctgtttttgctgagcct 3406910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 10995180 - 10995092
Alignment:
Q  45 caattgaatggtcgaattgaagtaggaaggaggggggtgttaacaaaattaaataacctcacc-taccttctattcttgcctacattacatt 135  Q
    |||||||||||| |||||||||||| | ||||| |  ||||| |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  10995180 caattgaatggttgaattgaagtagta-ggaggag--tgttagcaaaattaaataacctcaccttaccttctattcttgcctctattacatt 10995092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 470
Target Start/End: Complemental strand, 9676591 - 9676529
Alignment:
Q  407 tgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    |||||||||||||||||||||||||| |||  ||||||  ||||||| |||||||||| |||||    
T  9676591 tgtaaatcaccccgttgaaagtcaac-aaatagggtgaaaaatgatgattccggattacataat 9676529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 435
Target Start/End: Original strand, 31074926 - 31074954
Alignment:
Q  407 tgtaaatcaccccgttgaaagtcaacaaa 435  Q
    |||||||||||||||||||||||||||||    
T  31074926 tgtaaatcaccccgttgaaagtcaacaaa 31074954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 34319113 - 34319157
Alignment:
Q  396 aatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggg 440  Q
    ||||| ||| |||||||||| ||||||||||||||||||| ||||    
T  34319113 aatccgaaatgtgtaaatcatcccgttgaaagtcaacaaatgggg 34319157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 435
Target Start/End: Complemental strand, 35740186 - 35740158
Alignment:
Q  407 tgtaaatcaccccgttgaaagtcaacaaa 435  Q
    |||||||||||||||||||||||||||||    
T  35740186 tgtaaatcaccccgttgaaagtcaacaaa 35740158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 396 - 470
Target Start/End: Complemental strand, 6941262 - 6941188
Alignment:
Q  396 aatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataat 470  Q
    ||||| ||| ||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||    
T  6941262 aatccgaaaagtgtaaatcaccccgttgaaagtcagcaaaagggggtggtgaacgatggttccggattatataat 6941188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 371
Target Start/End: Complemental strand, 6941423 - 6941255
Alignment:
Q  203 tttcctctcgcgccctattttttcctaaaatactcgtagtccggattatataattcggaaccgttctgaaatgtacattccataatgttttgtgaatttt 302  Q
    ||||||| |||||||||||||| || ||||||| | |||| ||||||||||||| || | || ||| | ||| |  |||||  | |  ||  || |||||    
T  6941423 tttcctcgcgcgccctatttttccccaaaatacccctagttcggattatataatccgaacccattccggaatatcaattccggatttattcatggatttt 6941324  T
Q  303 ggcacttcagcatgctgatggatgaatatgtaagttatgaatagatggatccggattatataatccgaa 371  Q
    ||||||||| ||  |||||||||||  |||  |||||||||||||||||| | || |||||||||||||    
T  6941323 ggcacttcatcaccctgatggatgatgatgccagttatgaatagatggattcagagtatataatccgaa 6941255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 13286644 - 13286600
Alignment:
Q  396 aatccaaaaggtgtaaatcaccccgttgaaagtcaacaaaagggg 440  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||    
T  13286644 aatccaaaatgtgtaaatcaccccgttgaaagtcaacaaatgggg 13286600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 472
Target Start/End: Original strand, 10901329 - 10901393
Alignment:
Q  407 tgtaaatcaccccgttgaaagtcaacaaaagggggtgatgaatgatggttccggattatataattc 472  Q
    |||||||||||||||||||||||||| |||  ||||||  ||| ||| |||||||||| |||||||    
T  10901329 tgtaaatcaccccgttgaaagtcaac-aaatagggtgaaaaataatgtttccggattacataattc 10901393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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