View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_13 (Length: 513)
Name: NF6314_high_13
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 4 - 500
Target Start/End: Original strand, 39090441 - 39090937
Alignment:
| Q |
4 |
ctagagattgtttgcattactgggtagattgtggcaatggtggatttgacataaaggacttaaatttgttgtctttgggttatgagaaagtgagtcaaac |
103 |
Q |
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| T |
39090441 |
ctagagattgtttgcattactgggtagattgttgcaatggtggatttgacataaaggatttaaatttggggtctttgggttatgagaaagtgagtcaaac |
39090540 |
T |
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| Q |
104 |
ttaagggtatgaaagggatttggttaattttgattataattgaaattaggattttatgctattcatacatttttcatatgaaaaacctaattcagatcnn |
203 |
Q |
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| T |
39090541 |
ttaagggtatgaaaggggtttggttaattttgattataattgaaattaggattttatgctattcatacatttttcatatgaaaaacctaattcagatctt |
39090640 |
T |
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| Q |
204 |
nnnnnnnnnnnnnctgtcattgactataaaccacttggatctactttctgtgtgagataagggtttgcactgaaggatctatgttattgaagtagttaca |
303 |
Q |
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| T |
39090641 |
tttttttgtttttctgtcattgactataaaccacttggatctactttctgtgtgagataagggtttgcactgaaggatctatgttattgaagtagttaca |
39090740 |
T |
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| Q |
304 |
atattaagcaannnnnnngttgttgttatgattatttggacaaaattaagtgtctgattcaatagttaaagaaataagctttctggttcttatgaaaaat |
403 |
Q |
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| T |
39090741 |
atattaagcaacttttttgttgttgttatgattatttggacaaaattaagtgtctgattcaatagttaaagaaataagctttctggttcttatgaaaaat |
39090840 |
T |
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| Q |
404 |
tctcagattgctatatcatttcagcagataatcatgtatgagatttcatgttggatcaatttgatttgttgatatagcacaagatgtttcctgtgat |
500 |
Q |
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| T |
39090841 |
tctcagattgctatatcatttcagcagataatcatgtatgagatttcatgttggatcaatttgatttgttgatatagcacaagatgtttcctgtgat |
39090937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 406 - 493
Target Start/End: Complemental strand, 4652215 - 4652128
Alignment:
| Q |
406 |
tcagattgctatatcatttcagcagataatcatgtatgagatttcatgttggatcaatttgatttgttgatatagcacaagatgtttc |
493 |
Q |
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| T |
4652215 |
tcagattgctatatatgttcagtagataatcgtgtatgagatttcatgttggatcaatttgatttgttgatatagcataaggtgtttc |
4652128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 406 - 482
Target Start/End: Complemental strand, 9883362 - 9883286
Alignment:
| Q |
406 |
tcagattgctatatcatttcagcagataatcatgtatgagatttcatgttggatcaatttgatttgttgatatagca |
482 |
Q |
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| T |
9883362 |
tcagattgctatatctgttcagcagataatcatgtctgagatttcatgttggagcaatttcagtttttgatatagca |
9883286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 406 - 482
Target Start/End: Original strand, 20422830 - 20422906
Alignment:
| Q |
406 |
tcagattgctatatcatttcagcagataatcatgtatgagatttcatgttggatcaatttgatttgttgatatagca |
482 |
Q |
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| T |
20422830 |
tcagattgctatatctgttcagcagataatcatgtctgcgatttcatgttggagcaatttcagttgttgatatagca |
20422906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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