View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_15 (Length: 490)
Name: NF6314_high_15
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_15 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 220 - 474
Target Start/End: Original strand, 27668417 - 27668682
Alignment:
| Q |
220 |
atgcttgaatgatatgccatgcaaagacttcaacaaaggtgcaaagagcttgtttgaatgacgaatctcgaattatcggagtaacgttagttttttgaga |
319 |
Q |
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| T |
27668417 |
atgcttgaatgatatgccatgcaaaagcttcaacaaatgt--aaagagcttgtttgaatgacgaatctcaaattatcggagtaacgttagttttttgaga |
27668514 |
T |
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| Q |
320 |
ttttgtttgaaga---------tgatctgataaattgagattcgtcgttagtacaatttctctttacacccttgttgaggcctctgcatacataacattc |
410 |
Q |
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| T |
27668515 |
tttagtttgaagaaactaacgttgatctgataaattgagattcgtcattcgtacaatttctctttacacccttgttgaggcctctgcatacataacattc |
27668614 |
T |
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| Q |
411 |
aagcaccactagta----catggtttcttttatatatccaaaattaatttctgttatggctaactttc |
474 |
Q |
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| T |
27668615 |
aagcaccactagtacatccatggcttcttttatatatccaaaattaatttctgtcatggctaactttc |
27668682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 27668173 - 27668321
Alignment:
| Q |
62 |
taaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagataaatgatttgggtgtggagtggaaaggcgaggatcaaaaggccaagacca |
161 |
Q |
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| T |
27668173 |
taaatcaacggcttcagtattgaggttagtgatgttgacggagtcaagataaatgatttgggtgtggagttgaaaggcgaggatcaaaaggctaagacca |
27668272 |
T |
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| Q |
162 |
tttacgttgtctacgagaaagaaaatgtaaaccaacatggttaaagcaa |
210 |
Q |
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| T |
27668273 |
tttacgttgtctacgagaaagaaaatggaaaccaacatggttaaagcaa |
27668321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 27668918 - 27668773
Alignment:
| Q |
6 |
tggacatcatcattgttggaagtatgaaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagt |
105 |
Q |
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| T |
27668918 |
tggacctcttcattgttgtgagtatgaaatatgaaccataaatcaaatatggccgttaaatcaagggcttcggtattgaggttagtgatgttggaggagt |
27668819 |
T |
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| Q |
106 |
caagataaatgatttgggtgtggagtggaaaggcgaggatcaaaag |
151 |
Q |
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| T |
27668818 |
caaggtaaatggttggagtgtggagttgaaaggtgggtatcaaaag |
27668773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 27673687 - 27673541
Alignment:
| Q |
12 |
tcatcattgttggaagtatgaaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagat |
111 |
Q |
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| T |
27673687 |
tcatcattgttgggagtatgaaaaatgaacgatgaatcaaacgtggctattaagttaagggcttcggtattgaggttagttatgttgacggagtcaagat |
27673588 |
T |
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| Q |
112 |
aaatgatttgggtgtggagtggaaaggcgaggatcaaaaggccaaga |
158 |
Q |
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| T |
27673587 |
aaatgcttggggtgttgagttgaaaggtgggtatcaaaaggctaaga |
27673541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 27668141 - 27668180
Alignment:
| Q |
12 |
tcatcattgttggaagtatgaaaaatgaaccataaatcaa |
51 |
Q |
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| T |
27668141 |
tcatcattgttggaagtatgaaaaatgaaccataaatcaa |
27668180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 9033 - 8954
Alignment:
| Q |
32 |
aaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagat |
111 |
Q |
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| T |
9033 |
aaaaataaacgataaatcaaacgtggccgttaaattaacggctttggtattaaggttggtgatgttaacggaatcaagat |
8954 |
T |
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