View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_high_20 (Length: 480)

Name: NF6314_high_20
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_high_20
NF6314_high_20
[»] scaffold0300 (5 HSPs)
scaffold0300 (2-286)||(19440-19724)
scaffold0300 (263-458)||(19677-19872)
scaffold0300 (407-458)||(19857-19908)
scaffold0300 (408-458)||(19894-19944)
scaffold0300 (408-453)||(19912-19957)
[»] chr6 (5 HSPs)
chr6 (2-286)||(24674607-24674891)
chr6 (263-458)||(24674459-24674654)
chr6 (407-458)||(24674423-24674474)
chr6 (408-458)||(24674387-24674437)
chr6 (408-453)||(24674374-24674419)
[»] chr4 (6 HSPs)
chr4 (408-452)||(4495475-4495519)
chr4 (408-454)||(4495509-4495555)
chr4 (408-458)||(4495523-4495573)
chr4 (408-458)||(4495541-4495591)
chr4 (408-458)||(4495487-4495537)
chr4 (416-458)||(4495559-4495601)


Alignment Details
Target: scaffold0300 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 2 - 286
Target Start/End: Original strand, 19440 - 19724
Alignment:
Q  2 ggatgtcgaagaatatggtgagacatctaatggtcagactgaaactaatactgctaaaagacaggtaatttattaccactgcatacccattatattttac 101  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19440 ggatgtccatgaaaatggtgagacatctaatggtcagactgaaactaatactgctaaaagacaggtaatttattaccactgcatacccattatattttac 19539  T
Q  102 catgatagtgtttacaaagaataacctatatattgttttctcactattttgtagaagcaagtcagttctcaaattggtgtggataatatgtttgatgaaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19540 catgatagtgtttacaaagaataacctatatattgttttctcactattttgtagaagcaagtcagttctcaaattggtgtggataatatgtttgatgaca 19639  T
Q  202 ttactgatgaactgattgcatccattcctgatgttcatgtgtctggtaatgaaaatatgcctgtgtttggtaatgaaaatatgcc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||    
T  19640 ttactgatgaactgattgcatccattcctgatgttcatgtgtctggtaatgaaaatatgcctgtgtctgatagtgaaaatatgcc 19724  T

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Target: scaffold0300; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 263 - 458
Target Start/End: Original strand, 19677 - 19872
Alignment:
Q  263 tgtgtttggtaatgaaaatatgcctgtgtctgatagtgaaactatactagcagatgtgcctttgtctggtacaacaactgcaacaactgatgtgcctgct 362  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| || ||||||||||||||| |    
T  19677 tgtgtctggtaatgaaaatatgcctgtgtctgatagtgaaaatatgccagcagatgtgcctttgtctggtacaacaactacaccaactgatgtgcctgtt 19776  T
Q  363 gttgctgcaacaactgatgtgtctgtctctggtacagctgcacaaaatggcccaagaatgcttaatgtcccaagaatgctcaatggcccaagaatg 458  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||    
T  19777 gttgctgcagcaactgatgtgtctgtctctggtacaactgcacaaaatggcccaagaatgcttaatggcccaagaatgctaaatggtccaagaatg 19872  T

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Target: scaffold0300; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 458
Target Start/End: Original strand, 19857 - 19908
Alignment:
Q  407 aaatggcccaagaatgcttaatgtcccaagaatgctcaatggcccaagaatg 458  Q
    |||||| ||||||||||||||||  ||||||||| ||||||| |||||||||    
T  19857 aaatggtccaagaatgcttaatggtccaagaatgttcaatggtccaagaatg 19908  T

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Target: scaffold0300; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 19894 - 19944
Alignment:
Q  408 aatggcccaagaatgcttaatgtcccaagaatgctcaatggcccaagaatg 458  Q
    ||||| ||||||||||||||||  ||||||||| | |||||||||||||||    
T  19894 aatggtccaagaatgcttaatggtccaagaatgtttaatggcccaagaatg 19944  T

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Target: scaffold0300; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 453
Target Start/End: Original strand, 19912 - 19957
Alignment:
Q  408 aatggcccaagaatgcttaatgtcccaagaatgctcaatggcccaa 453  Q
    ||||| ||||||||| |||||| |||||||||||||||||| ||||    
T  19912 aatggtccaagaatgtttaatggcccaagaatgctcaatggaccaa 19957  T

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Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 2 - 286
Target Start/End: Complemental strand, 24674891 - 24674607
Alignment:
Q  2 ggatgtcgaagaatatggtgagacatctaatggtcagactgaaactaatactgctaaaagacaggtaatttattaccactgcatacccattatattttac 101  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24674891 ggatgtccatgaaaatggtgagacatctaatggtcagactgaaactaatactgctaaaagacaggtaatttattaccactgcatacccattatattttac 24674792  T
Q  102 catgatagtgtttacaaagaataacctatatattgttttctcactattttgtagaagcaagtcagttctcaaattggtgtggataatatgtttgatgaaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24674791 catgatagtgtttacaaagaataacctatatattgttttctcactattttgtagaagcaagtcagttctcaaattggtgtggataatatgtttgatgaca 24674692  T
Q  202 ttactgatgaactgattgcatccattcctgatgttcatgtgtctggtaatgaaaatatgcctgtgtttggtaatgaaaatatgcc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||    
T  24674691 ttactgatgaactgattgcatccattcctgatgttcatgtgtctggtaatgaaaatatgcctgtgtctgatagtgaaaatatgcc 24674607  T

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Target: chr6; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 263 - 458
Target Start/End: Complemental strand, 24674654 - 24674459
Alignment:
Q  263 tgtgtttggtaatgaaaatatgcctgtgtctgatagtgaaactatactagcagatgtgcctttgtctggtacaacaactgcaacaactgatgtgcctgct 362  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| || ||||||||||||||| |    
T  24674654 tgtgtctggtaatgaaaatatgcctgtgtctgatagtgaaaatatgccagcagatgtgcctttgtctggtacaacaactacaccaactgatgtgcctgtt 24674555  T
Q  363 gttgctgcaacaactgatgtgtctgtctctggtacagctgcacaaaatggcccaagaatgcttaatgtcccaagaatgctcaatggcccaagaatg 458  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||    
T  24674554 gttgctgcagcaactgatgtgtctgtctctggtacaactgcacaaaatggcccaagaatgcttaatggcccaagaatgctaaatggtccaagaatg 24674459  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 458
Target Start/End: Complemental strand, 24674474 - 24674423
Alignment:
Q  407 aaatggcccaagaatgcttaatgtcccaagaatgctcaatggcccaagaatg 458  Q
    |||||| ||||||||||||||||  ||||||||| ||||||| |||||||||    
T  24674474 aaatggtccaagaatgcttaatggtccaagaatgttcaatggtccaagaatg 24674423  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 24674437 - 24674387
Alignment:
Q  408 aatggcccaagaatgcttaatgtcccaagaatgctcaatggcccaagaatg 458  Q
    ||||| ||||||||||||||||  ||||||||| | |||||||||||||||    
T  24674437 aatggtccaagaatgcttaatggtccaagaatgtttaatggcccaagaatg 24674387  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 24674419 - 24674374
Alignment:
Q  408 aatggcccaagaatgcttaatgtcccaagaatgctcaatggcccaa 453  Q
    ||||| ||||||||| |||||| |||||||||||||||||| ||||    
T  24674419 aatggtccaagaatgtttaatggcccaagaatgctcaatggaccaa 24674374  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 452
Target Start/End: Complemental strand, 4495519 - 4495475
Alignment:
Q  408 aatggcccaagaatgcttaatgtcccaagaatgctcaatggccca 452  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||    
T  4495519 aatggcccaaggatgcttaatggcccaagaatgctcaatggccca 4495475  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 454
Target Start/End: Complemental strand, 4495555 - 4495509
Alignment:
Q  408 aatggcccaagaatgcttaatgtcccaagaatgctcaatggcccaag 454  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  4495555 aatggcccaagaatgctcaatggccctagaatgctcaatggcccaag 4495509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 4495573 - 4495523
Alignment:
Q  408 aatggcccaagaatgcttaatgtcccaagaatgctcaatggcccaagaatg 458  Q
    |||||||| |||||||| |||| ||||||||||||||||||||| ||||||    
T  4495573 aatggccctagaatgctcaatggcccaagaatgctcaatggccctagaatg 4495523  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 4495591 - 4495541
Alignment:
Q  408 aatggcccaagaatgcttaatgtcccaagaatgctcaatggcccaagaatg 458  Q
    ||||||||||| ||||| |||| ||| ||||||||||||||||||||||||    
T  4495591 aatggcccaaggatgctcaatggccctagaatgctcaatggcccaagaatg 4495541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 4495537 - 4495487
Alignment:
Q  408 aatggcccaagaatgcttaatgtcccaagaatgctcaatggcccaagaatg 458  Q
    |||||||| |||||||| |||| |||||| ||||| |||||||||||||||    
T  4495537 aatggccctagaatgctcaatggcccaaggatgcttaatggcccaagaatg 4495487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 458
Target Start/End: Complemental strand, 4495601 - 4495559
Alignment:
Q  416 aagaatgcttaatgtcccaagaatgctcaatggcccaagaatg 458  Q
    |||||||||||||| |||||| |||||||||||||| ||||||    
T  4495601 aagaatgcttaatggcccaaggatgctcaatggccctagaatg 4495559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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