View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_21 (Length: 471)
Name: NF6314_high_21
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 3005755 - 3005494
Alignment:
| Q |
14 |
ttaatttaattgatccttcaaaacaaatgtgcagatctatataaattatggttgaaacattatggagactggccccaaacaggtgaaattatacaaactt |
113 |
Q |
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| T |
3005755 |
ttaatttaattgatcctttaaaacaaatgtgcagatctatataaattatggttgaaacattatggagactggccccaaacaggtgaaattatacaaactt |
3005656 |
T |
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| Q |
114 |
atagtgagacattttcacaaattttataatatatcgataaaaaa-tgagaattggccaaagaacaatattctcatttattttatagcaaagccaacttta |
212 |
Q |
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| T |
3005655 |
atagtgagacattttcacaaat------atatatcagtaaaaaaatgagaattggccaaagaacaatattctcatttattttatagcaaggccaacttta |
3005562 |
T |
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| Q |
213 |
tgtatgattcaagtggattgatttatttttgatgatatattcatttatcgttgatcatctgttgtatt |
280 |
Q |
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| T |
3005561 |
tgtatgattcaagtggattgatttatttttgatgatatattcatttatcgttgatcatatgttgtatt |
3005494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 287 - 453
Target Start/End: Complemental strand, 3005448 - 3005282
Alignment:
| Q |
287 |
gttataagccataaaactaactgattaatttaaaatccaagtgagcataatctaaaaataaagaaccaagtctccatgaaccattcattaaaatcaatag |
386 |
Q |
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| T |
3005448 |
gttataagccataaaactaactgattaatttaaaatccaagtgagcataatctaaaaataaataaccaagtctccatgaaccattcattaaaatcaatag |
3005349 |
T |
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| Q |
387 |
taatacaaaaagacaaatctcagttcaagacatacacataggacctggtacactccatataacaaaa |
453 |
Q |
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| T |
3005348 |
taatacaaaaagacaaatcccagttcaagacatacacataggacctggtacactccatataacaaaa |
3005282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 4 - 211
Target Start/End: Original strand, 4641228 - 4641447
Alignment:
| Q |
4 |
aacaacttagttaatttaattgatccttcaaaacaaatgtgcagatctatataaattatggttgaaacattatggaga---------ctggccccaaaca |
94 |
Q |
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| T |
4641228 |
aacaacttagttaatttaattgatccttcaaaacaaatgtgcagatctatataaaatatggttgaaacattatggagaatgtcgagactgactccaaaca |
4641327 |
T |
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| Q |
95 |
ggtgaaattatacaaacttatagtgagacattttcacaaattttataatatatc---gataaaaaatgagaattggccaaagaacaatattctcatttat |
191 |
Q |
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| T |
4641328 |
ggtgaaattatacaaacttatagcgagacatttccacaaattttgtaatatatcgaagaaaaaaaatgagaattggccaaaggtcaatattctcatttat |
4641427 |
T |
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| Q |
192 |
tttatagcaaagccaacttt |
211 |
Q |
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|||||||||| | ||||||| |
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| T |
4641428 |
tttatagcaaggacaacttt |
4641447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 363 - 453
Target Start/End: Original strand, 4641533 - 4641622
Alignment:
| Q |
363 |
tgaaccattcattaaaatcaatagtaatacaaaaagacaaatctcagttcaagacatacacataggacctggtacactccatataacaaaa |
453 |
Q |
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|||| |||||||| ||||| || |||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
4641533 |
tgaatcattcattcaaatctat-gtaatacataaagacaaatctgagttcaagacatacacataggacatggtacactctatataacaaaa |
4641622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 7 - 280
Target Start/End: Original strand, 5562630 - 5562901
Alignment:
| Q |
7 |
aacttagttaatttaattgatccttcaaaacaaatgtgcagatctatataaattatggttgaaacattatggagactggccccaaacaggtgaaattata |
106 |
Q |
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| T |
5562630 |
aacttagttaatttaattgatccttcaaaaaaaatgtgcagatctatataaattatggctaaaacattatggagaccagccccaaataggtgaaattaaa |
5562729 |
T |
|
| Q |
107 |
caaacttatagtgagacattttcacaaattttataatatatc--gataaaaaatgagaattggccaaagaacaatattctcatttattttatagcaaagc |
204 |
Q |
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||||||||||| |||| | | | |||||||| | ||||||| || ||||||||||||||||||||||| ||||||| | |||||||||||||||| || |
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| T |
5562730 |
caaacttatagcgaga-aataactcaaattttgtgatatatcgagaaaaaaaatgagaattggccaaagatcaatattttaatttattttatagcaaggc |
5562828 |
T |
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| Q |
205 |
caactttatgtatgattcaagtggattgatttatttttgatgatatattcatttatcgttgatcatctgttgtatt |
280 |
Q |
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| T |
5562829 |
caactttatgtatgatttaagt--tttgattt-gttttgataatgtattcgtttatcattgatcatctattgtatt |
5562901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 453
Target Start/End: Original strand, 5562931 - 5562974
Alignment:
| Q |
410 |
ttcaagacatacacataggacctggtacactccatataacaaaa |
453 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
5562931 |
ttcaagacatacacataggacctgctacactccatattacaaaa |
5562974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 9e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 280 - 453
Target Start/End: Complemental strand, 7853273 - 7853100
Alignment:
| Q |
280 |
tgacaatgttataagccataaaactaactgattaatttaaaatccaagtgagcataatctaaaaataaagaaccaagtctccatgaaccattcattaaaa |
379 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||| |
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| T |
7853273 |
tgacaaagttataagccataaatctaactgattaatttaagatccaagtgagcataatctaaaaataaagaaccaagtatgcatgaatcattcattcaaa |
7853174 |
T |
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| Q |
380 |
tcaatagtaatacaaaaagacaaatctcagttcaagacatacacataggacctggtacactccatataacaaaa |
453 |
Q |
| |
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|||||||||||||| ||||||||||| |||| ||||||||||||||||||| || ||||||||||||||||||| |
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| T |
7853173 |
tcaatagtaatacataaagacaaatcccagtccaagacatacacataggacttgctacactccatataacaaaa |
7853100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 7853491 - 7853391
Alignment:
| Q |
170 |
aaagaacaatattctcatttattttatagcaaagccaactttatgtatgattcaagtggattgatttatttttgatgatatattcatttatcgttgatca |
269 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| |||||||| || ||||| |||||| ||||||| |
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| T |
7853491 |
aaagatcaatattctcatttattttatagcaaggccaactttatgtatgatttaagt--tttgatttgtttttgataatgtattcgtttatcattgatca |
7853394 |
T |
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| Q |
270 |
tct |
272 |
Q |
| |
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||| |
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| T |
7853393 |
tct |
7853391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 7853617 - 7853567
Alignment:
| Q |
3 |
caacaacttagttaatttaattgatccttcaaaacaaatgtgcagatctat |
53 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7853617 |
caacaatttagttaatttaattgatccttcaaaacaaatgtgcagatctat |
7853567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 7853569 - 7853493
Alignment:
| Q |
74 |
tatggagactggccccaaacaggtgaaattatacaaacttatagtgagacat-tttcacaaattttataatatatcga |
150 |
Q |
| |
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||||||||| ||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||| ||||||||| |
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| T |
7853569 |
tatggagaccggccccaaacaggtg-aattaaacaaacttatagcaagacataactcacaaattttatgatatatcga |
7853493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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