View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6314_high_22 (Length: 471)
Name: NF6314_high_22
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_22 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 26192299 - 26191861
Alignment:
| Q |
19 |
aatatagtattctaaccacgagcaacccctcacccagaactacccctctacaaaagtacaccgttttagaagtatcacatgatattgatgttcccaaatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
26192299 |
aatatagtattctaaccacgagcaacccctcacccagaactacccctctacaaaagtacactgttttagaagtatcacatgatattgatgttcccaaatg |
26192200 |
T |
|
| Q |
119 |
ggtagcttgtcatcccctcccatatccatatgccatttactattgccattacattgccacaaagattaaagtgttcaaagtctcacttgttagtgatcag |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| || |
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|
| T |
26192199 |
ggtagcttgtcatccccttccatatccatatgccatttactattgccattacattgccacaaagactaaagtgttcaaggtctcacttgttagtgatgag |
26192100 |
T |
|
| Q |
219 |
aatggagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatcatattatattcaaacaacttgggattaaggctggga |
318 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26192099 |
aatggagataaaatggaagctcttggagtttgccattttgatacatctgaatggaaccctaatcatattatattcaaacaacttgggattaaggctggga |
26192000 |
T |
|
| Q |
319 |
ggaattctccagtgtgtcactttttccctgtgaaccatcttatgtggatcccaatgtagccatcccaaagccactatgtgaaatgagtttgtctatctag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26191999 |
agaattctccagtgtgtcactttttccctgtgaaccatcttatgtggattccaatctagccatcccaaagccactatgtgaaatgagtttgtctatctag |
26191900 |
T |
|
| Q |
419 |
atttgtataataaaggttttatcaatcttaccaatgatg |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26191899 |
atttgtataataaaggttttatcaatcttaccaatgatg |
26191861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 23 - 446
Target Start/End: Complemental strand, 26180016 - 26179595
Alignment:
| Q |
23 |
tagtattctaaccacgagcaacccctcacccagaactacccctctacaaaagtacaccgttttagaagtatcacatgatattgatgttcccaaatgggta |
122 |
Q |
| |
|
||||||||||||||| | ||| |||||||| | | || |||| |||| ||||||||| |||| |||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
26180016 |
tagtattctaaccaccaacaaaccctcaccgacagctgtccctttacagaagtacaccattttggaagtatcccatgatattgatgctccaaaatgggta |
26179917 |
T |
|
| Q |
123 |
gcttgtcatcccctcccatatccatatgccatttactattgccattacattgccacaaagattaaagtgttcaaagtctcacttgttagtgatcagaatg |
222 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||| |||||||| || ||| || || ||||||||| ||||| ||||| ||||| |||||| |
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|
| T |
26179916 |
gcttgtcatcccctctcatatccatatgccatttacttttgtcattacatagctacagggactagagtgttcaaggtctcgcttgtcggtgatgagaatg |
26179817 |
T |
|
| Q |
223 |
gagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatcatattatattcaaacaacttgggattaaggctgggaggaa |
322 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||||| || |||||||| |||||||| ||||||| ||||| | || ||| | |||||||| |||| ||| |
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|
| T |
26179816 |
gagataaaatggaagctgttggaatttgccatttggacacatctgattggaacccagatcatataatatttaggcagcttagcattaaggccgggaagaa |
26179717 |
T |
|
| Q |
323 |
ttctccagtgtgtcactttttccctgtgaaccatcttatgtggatcccaatgtagccatcccaaagccactatgtgaaatgagtttgtctatctagattt |
422 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| ||||| | |||||| | || | | |||||||| ||||||| |||||| ||||||||||| || |
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|
| T |
26179716 |
ctctccagtgtgtcacttcttacctgtgaaccatcttctgtgggttccaatgcaacc-ttcaaaagccaccatgtgaagtgagttggtctatctagactt |
26179618 |
T |
|
| Q |
423 |
gtataataaaggttttatcaatct |
446 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
26179617 |
gtataataaagg-tttatcaatct |
26179595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 62 - 446
Target Start/End: Complemental strand, 26162180 - 26161798
Alignment:
| Q |
62 |
ccctctacaaaagtacaccgttttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcccctcccatatccatatgccatttactat |
161 |
Q |
| |
|
|||| |||| || |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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|
| T |
26162180 |
ccctttacagaattacaccattttggaagtatcacatgatattgatgctcccaaatgggtagcttgtcatcccctctcatatccatatgccatttacttt |
26162081 |
T |
|
| Q |
162 |
tgccattacattgccacaaagattaaagtgttcaaagtctcacttgttagtgatcagaatggagataaaatagaagctcttggagtttgccattttgata |
261 |
Q |
| |
|
|| |||||||| || ||| || || ||||||||| |||||||||||| ||||| ||||||||||||||| |||| | ||||| |||| ||||| || | |
|
|
| T |
26162080 |
tgtcattacatagctacagggactagagtgttcaaggtctcacttgttggtgatgcgaatggagataaaatggaagttgttggaatttgtcatttggaca |
26161981 |
T |
|
| Q |
262 |
catctgaatggaaccctaatcatattatattcaaacaacttgggattaaggctgggaggaattctccagtgtgtcactttttccctgtgaaccatcttat |
361 |
Q |
| |
|
||||||| |||||||| |||||||| |||| | || ||| || ||| ||||||| ||| |||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
26161980 |
catctgattggaacccagatcatattgtatttaggcagcttagggttaccgctgggaagaactctccaatgtgtcacttcttacctgtgaaccatcttat |
26161881 |
T |
|
| Q |
362 |
gtggatcccaatgtagccatcccaaagccactatgtgaaatgagtttgtctatctagatttgtataataaaggttttatcaatct |
446 |
Q |
| |
|
|||| | |||||| |||| | | |||||||| ||||||| |||||| ||||||||| | |||||||||||||| ||||||||||| |
|
|
| T |
26161880 |
gtgggttccaatgcagcc-ttcaaaagccaccatgtgaagtgagttggtctatctaaacttgtataataaagg-tttatcaatct |
26161798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 62 - 294
Target Start/End: Complemental strand, 25929197 - 25928965
Alignment:
| Q |
62 |
ccctctacaaaagtacaccgttttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcccctcccatatccatatgccatttactat |
161 |
Q |
| |
|
|||||| ||||| |||||| ||||| ||||||||| ||| ||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25929197 |
ccctctccaaaaatacaccattttaaaagtatcacgtgacattagtgttcccaaatgggtatcttgccatcccctcccatatccatatgccatttactat |
25929098 |
T |
|
| Q |
162 |
tgccattacattgccacaaagattaaagtgttcaaagtctcacttgttagtgatcagaatggagataaaatagaagctcttggagtttgccattttgata |
261 |
Q |
| |
|
|| |||||||| || ||| | || |||||||| |||||| | ||| ||||| |||||||||||||||||||||| | ||| | |||||||| |||| |
|
|
| T |
25929097 |
tgtcattacatagctacaggaactagggtgttcaaggtctcattggttggtgatgtgaatggagataaaatagaagctgtaggaatgtgccatttggata |
25928998 |
T |
|
| Q |
262 |
catctgaatggaaccctaatcatattatattca |
294 |
Q |
| |
|
||||||| ||||| || ||||||| ||||||| |
|
|
| T |
25928997 |
catctgattggaatccagatcatataatattca |
25928965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 26175327 - 26175213
Alignment:
| Q |
19 |
aatatagtattctaaccacgagcaacccctcacccagaactacccctctacaaaagtacaccgttttagaagtatcacatgatattgatgttcccaaatg |
118 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26175327 |
aatatagtattctgaccaccagcaacccctcaaccagaactatccctctacaaaagtacaccattttagaagtatcacatgatattgatgttccctaatg |
26175228 |
T |
|
| Q |
119 |
ggtagcttgtcatcc |
133 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26175227 |
ggtagcttgtcatcc |
26175213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 114 - 365
Target Start/End: Original strand, 25648778 - 25649029
Alignment:
| Q |
114 |
aaatgggtagcttgtcatcccctcccatatccatatgccatttactattgccattacattgccacaaagattaaagtgttcaaagtctcacttgttagtg |
213 |
Q |
| |
|
||||||||| |||| |||||| | |||||||||||||| ||||| ||| ||| |||| || ||| || |||||||||||| || || | ||| ||| |
|
|
| T |
25648778 |
aaatgggtatcttgccatcccatgccatatccatatgctgtttacggttgtcatcacatagctacagggagtaaagtgttcaaggtatctttggttggtg |
25648877 |
T |
|
| Q |
214 |
atcagaatggagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatcatattatattcaaacaacttgggattaaggc |
313 |
Q |
| |
|
|| |||||||||||||||| |||||||||||| | || || || ||||||||||| ||||||||| ||||| ||||||| ||| | || ||| | |
|
|
| T |
25648878 |
atgagaatggagataaaatggaagctcttggaatgtgtcacttggatacatctgactggaaccctgatcatgagttattcaagacactaagaatcaagcc |
25648977 |
T |
|
| Q |
314 |
tgggaggaattctccagtgtgtcactttttccctgtgaaccatcttatgtgg |
365 |
Q |
| |
|
||||| ||||||| ||| ||||||||| || ||||| ||||||||| ||||| |
|
|
| T |
25648978 |
tgggaagaattcttcagcgtgtcacttctttcctgtaaaccatcttttgtgg |
25649029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 26 - 285
Target Start/End: Original strand, 32189540 - 32189799
Alignment:
| Q |
26 |
tattctaaccacgagcaacccctcacccagaactacccctctacaaaagtacaccgttttagaagtatcacatgatattgatgttcccaaatgggtagct |
125 |
Q |
| |
|
|||||| || || |||||||| ||||||| ||| |||||||| || || |||||| |||| |||||||||| ||| ||| ||| ||| |||||||| ||| |
|
|
| T |
32189540 |
tattctcacaaccagcaacccatcacccacaaccacccctctccagaaatacaccattttggaagtatcacctgacattaatgctccaaaatgggttgct |
32189639 |
T |
|
| Q |
126 |
tgtcatcccctcccatatccatatgccatttactattgccattacattgccacaaagattaaagtgttcaaagtctcacttgttagtgatcagaatggag |
225 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||| ||| ||| |||| || ||| || |||||||||||| || || | ||| || || ||||||||| |
|
|
| T |
32189640 |
tgccatcccatcccatatccatatgccatttacggttgtcatcacatagctacagggagtaaagtgttcaaggtatctttggttggtaatgagaatggag |
32189739 |
T |
|
| Q |
226 |
ataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatcata |
285 |
Q |
| |
|
||||||| |||||||||||| | || ||||| |||||||||| |||||||| ||||||| |
|
|
| T |
32189740 |
ataaaatggaagctcttggaatgtgtcatttggatacatctggttggaacccaaatcata |
32189799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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