View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_27 (Length: 445)
Name: NF6314_high_27
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 16375367 - 16375098
Alignment:
| Q |
1 |
ttgtattgatctctg-ttttgtggtccattatggggtggcttgcttgttt-gtctctgttggtttccatcttgtattcaaaagttaaaaattataattga |
98 |
Q |
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| T |
16375367 |
ttgtattgatctctgattttgtggtccattatggggtggcttgcttgttttgtctctgttggtttccatcttgtattcaaaagttaaaaattataattga |
16375268 |
T |
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| Q |
99 |
tccagctgaattgcaccaagaacattaatgaaacatgtacatgtaataatctttcactatttggacaattattctgtcgtataaggagtcagcacgtcat |
198 |
Q |
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| T |
16375267 |
tccagctgaattgcaccaagaacattaatgaaacatgtacatgtaataatctttcactatttggacaattattctgtcgtataaggagtcagcacgtcat |
16375168 |
T |
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| Q |
199 |
gcaaggactgagagggtgagttatgggcaatgcagtagcccattgctagaatctaaggttgttatagcac |
268 |
Q |
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| T |
16375167 |
gcaaggactgagagggtgagttatgggcaatgcagtagcccattgctagaatctaaggttgttatagcac |
16375098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 318 - 435
Target Start/End: Complemental strand, 16375099 - 16374982
Alignment:
| Q |
318 |
acaatgtgtggctgatctcagtcagttgattggatatcattaaatttgtacttactatactagtatgtctctgatgaaatttgtccataccctagtatag |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
16375099 |
acaaggtgtggctgatctcagtcagttgattggatatcattaaatttgtacttactatactagtatgtctatgaggaaatttgtccataccctagtatag |
16375000 |
T |
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| Q |
418 |
ttcttgttttgatgatgt |
435 |
Q |
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| T |
16374999 |
ttcttgttttgatgatgt |
16374982 |
T |
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