View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_31 (Length: 417)
Name: NF6314_high_31
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 45461267 - 45461666
Alignment:
| Q |
1 |
gggccaaaatattataaaatatatcgttgcattgtgagatatggatattgtgataataatataagggacacgagtgattttgaggagaaaatcattggtg |
100 |
Q |
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| T |
45461267 |
gggccaaaatattataaaatatatcgttgcattgtgagatatggatattgtgataataatataagggacacgagtgattttgaggagaaaatcatcggtg |
45461366 |
T |
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| Q |
101 |
ctataggagaattcatttccattgaacagatgagtgacattgaatcaatggtttcggcagaagaaaaaatgatgatagtgggaaattcatcagatggaaa |
200 |
Q |
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| T |
45461367 |
ctataggagaattcatttccattgaacagatgagtgacattgaatcaatggtttcggcagaagaaaaaatgatgatagtgggaaattcatcagatggaaa |
45461466 |
T |
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| Q |
201 |
tgcattagtccctttgatgaatgatgaaacatgcaatgaagttagcattactaatgaagctcagattagcccagcagtaattgaggaaaatgatcatacg |
300 |
Q |
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| T |
45461467 |
tgcattagtccctttgatgaatgatgaaacatgcaatgaagttagcattactaatgaagctcagattagcccagcagtaattgaggaaaatgatcatgca |
45461566 |
T |
|
| Q |
301 |
ttgttggcgagtagtagctcttgcaacaaaagnnnnnnngtacggttcatgttgcctcctgctagtagtagtcctaaaatgggagaatctgtgaggaagg |
400 |
Q |
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| T |
45461567 |
ttgttggcgagtagtagctcttgcaacaaaagaaaaaaagtacggttcatgttgcctcctgctagtagtagtcctaaaatgggagaatctgtgaggaagg |
45461666 |
T |
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