View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_36 (Length: 390)
Name: NF6314_high_36
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 31725753 - 31726088
Alignment:
| Q |
18 |
actggagagtgaattttgatcacgttgcatttggagacctcggtaattggtgccggtgtaagcaatacgcataacaacctttttcttacgaaatggttgc |
117 |
Q |
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| T |
31725753 |
actggagagtgaattttgatcacgttgcatttggagacctcggtaattggtgccggtgtaagcaatacgcataacaacctttttcttacgaaatggttgc |
31725852 |
T |
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| Q |
118 |
catgaatatgattgtggcgtagatgaaaatgagcagtaacgaaaacattcccatcttcttctgttcccaataatgggtgtactatttgtgtatggaactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31725853 |
catgaatatgattgtggcgtagatgaaaatgagcagtaacgaaaacattcccatcttcttctgttcccaataatgggtgtactatttgtgtatggaactt |
31725952 |
T |
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| Q |
218 |
ttctcagcaatggagacagtgtgagtcgcagagatgaagctgcagcagccatcttcaccttcttcgactaataacactcttttatcaagnnnnnnnncac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
31725953 |
ttctcagcaatggagacagtgtgagtcgcagagatgaagctgcagcagccatcttcaccttcttcgactaataacactcttttatgaagttttttttcac |
31726052 |
T |
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| Q |
318 |
aagttctcctaaaagagcgtaaaaaacttaattttg |
353 |
Q |
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||||||||||| ||||| |||||||||||||||||| |
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| T |
31726053 |
aagttctcctataagagtgtaaaaaacttaattttg |
31726088 |
T |
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