View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_high_37 (Length: 390)

Name: NF6314_high_37
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_high_37
NF6314_high_37
[»] chr8 (3 HSPs)
chr8 (13-384)||(20695086-20695454)
chr8 (13-384)||(16683203-16683574)
chr8 (17-384)||(1010175-1010542)
[»] chr2 (3 HSPs)
chr2 (10-384)||(32115489-32115862)
chr2 (124-378)||(10235682-10235936)
chr2 (10-79)||(10235602-10235671)
[»] scaffold0011 (1 HSPs)
scaffold0011 (15-369)||(248728-249082)
[»] chr3 (8 HSPs)
chr3 (13-250)||(33856733-33856970)
chr3 (13-369)||(41737228-41737583)
chr3 (19-194)||(11306743-11306917)
chr3 (10-377)||(33403339-33403706)
chr3 (20-100)||(30828422-30828502)
chr3 (20-199)||(463128-463307)
chr3 (10-57)||(22758081-22758128)
chr3 (68-108)||(16985988-16986028)
[»] scaffold0015 (1 HSPs)
scaffold0015 (17-250)||(5594-5826)
[»] chr1 (6 HSPs)
chr1 (12-249)||(37716001-37716238)
chr1 (65-227)||(12045436-12045598)
chr1 (179-374)||(17540449-17540643)
chr1 (12-143)||(33799878-33800005)
chr1 (66-108)||(4693404-4693446)
chr1 (20-86)||(50817783-50817849)
[»] chr4 (1 HSPs)
chr4 (20-100)||(53100823-53100903)
[»] chr5 (3 HSPs)
chr5 (10-84)||(23647410-23647484)
chr5 (10-84)||(23811089-23811163)
chr5 (66-111)||(4636863-4636908)
[»] chr7 (6 HSPs)
chr7 (257-373)||(12463935-12464051)
chr7 (12-56)||(13850930-13850974)
chr7 (23-116)||(5846858-5846951)
chr7 (20-141)||(12464165-12464284)
chr7 (18-56)||(31599969-31600007)
chr7 (61-114)||(12092070-12092123)
[»] chr6 (5 HSPs)
chr6 (82-143)||(15184557-15184618)
chr6 (66-108)||(25740766-25740808)
chr6 (82-143)||(15160970-15161031)
chr6 (82-143)||(15170979-15171040)
chr6 (82-143)||(15179751-15179812)
[»] scaffold1243 (1 HSPs)
scaffold1243 (82-143)||(1250-1311)


Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 384
Target Start/End: Complemental strand, 20695454 - 20695086
Alignment:
Q  13 aatatggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcacca 112  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  20695454 aatatggtcctgcaaaacaacattctgcaacagagatgtacactgggacaccgactcctcc---cacgccaaaaggcgtctcctccactcccaagcacca 20695358  T
Q  113 ccacgatcgatccaccccctactctccatctgacgcactgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaattgcacctgcaaaaacacac 212  Q
    |||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20695357 ccaccatcggtccaccccctactctccatctgacgcaccgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaattgcacctgcaaaaacacac 20695258  T
Q  213 cccccacccaattatttgactaaaaatatgtgctacctttgccaccgactacccttcgcaaattatctttgaaccagctcccctcccactcacccacact 312  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20695257 cccccacccaattatctgactaaaaatatgtgctacctttgccaccgtctacccttcgcaaattatcttcgaaccagctcccctcccactcacccacact 20695158  T
Q  313 gcggggaatactagaaatcatcctccaccacaaagagctatctctcccaccccccttcaaccgcctcccttc 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20695157 gcggggaatactagaaatcatcctccaccacaaagagctatctctcccaccctccttcaaccgcctcccttc 20695086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 384
Target Start/End: Complemental strand, 16683574 - 16683203
Alignment:
Q  13 aatatggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcacca 112  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  16683574 aatatggtcttgcaaaacaacattatgcaacagagatgcacactgggacactgactcctcctcccacgccaaaatgcgcctcctccactcccaagcacca 16683475  T
Q  113 ccacgatcgatccaccccctactctccatctgacgcactgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaattgcacctgcaaaaacacac 212  Q
    |||| |||    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||  ||||     
T  16683474 ccaccatcaccgcaccccctactctccatctgacgcaccgtcacccatttatcaaccgccaaatcaaaaaggcgaggaaattgtacctgcaaaggcaca- 16683376  T
Q  213 cccccacccaattatttgactaaaaatatgtgctacctttgccaccgactacccttcgcaaattatctttgaaccagctcccctcccactcacccacact 312  Q
    ||||||||||||||| |||| ||||||||||||| ||| || |||| |||||||||| |||||||||||||||||| ||||||| |||||| |||||||     
T  16683375 cccccacccaattatctgaccaaaaatatgtgctgcctctgtcaccaactacccttcacaaattatctttgaaccaactccccttccactctcccacacc 16683276  T
Q  313 gcggggaatactagaaatcatcctccaccac-aaagagctatctctcccaccccccttcaaccgcctcccttc 384  Q
    |||| |||| ||||||||||||| ||||||| |||||| |||||||||||||| |||||| | ||||||||||    
T  16683275 gcggcgaatgctagaaatcatccaccaccacaaaagagatatctctcccaccctccttcagctgcctcccttc 16683203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 1010175 - 1010542
Alignment:
Q  17 tggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcaccaccac 116  Q
    ||||||||||||| | |||| || ||||||||||||||||  |||||||||||||||||||||| ||| || | ||||||||||||||| ||||| ||||    
T  1010175 tggtcctgcaaaaaaccattatgaaacagagatgcacacttagacaccgactcctcctcccacgtcaagagacatctcctccactcccaggcacctccac 1010274  T
Q  117 gatcgatccaccccctactctccatctgacgcactgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaattgcacctgcaaaaacacaccccc 216  Q
     | ||  ||||||||||| |||||| ||   ||||||||| ||||| |||||| |||||| |||||||||||| ||||  ||||| |||  |||  ||||    
T  1010275 caacggcccaccccctaccctccatttgctacactgtcacccatttgtcaaccaccaaataaaaaaggcgagggaattttacctgtaaaggcacttcccc 1010374  T
Q  217 cacccaattatttgactaaaaatatgtgctacctttgccaccgactacccttcgcaaattatctttgaaccagctcccctcccactcacccacactgcgg 316  Q
    ||||||||||| || | ||||| |||||||||| |  |  || || ||||| |  | |||| ||| |||||| ||||||||| ||   |||||||  ||     
T  1010375 cacccaattatctgtccaaaaaaatgtgctaccatcacttcctacaaccctacaaacattaccttcgaaccaactcccctccgacaaccccacaccacgt 1010474  T
Q  317 ggaatactagaaatcatcctccaccacaaagagctatctctcccaccccccttcaaccgcctcccttc 384  Q
     |||||||||  ||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||    
T  1010475 cgaatactagtgatcatcctccaccacgaagaactatctctcccaccctccttcaaccacctcccttc 1010542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 10 - 384
Target Start/End: Complemental strand, 32115862 - 32115489
Alignment:
Q  10 aagaatatggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagca 109  Q
    |||| |||| ||| ||||||||||||| ||||||| |||||||||||  || |||| |||||||||||||||||| || || | |||||||||||| |||    
T  32115862 aagattatgatcccgcaaaacaacattatgcaacaaagatgcacactctgaaaccgtctcctcctcccacgccaagagacgccgcctccactcccaggca 32115763  T
Q  110 ccaccacgatcgatccaccccctactctccatctgacgcactgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaattgcacctgcaaaaaca 209  Q
    ||||||| ||||  |||||||||| |||||||||   |||| || || ||||||| ||||||||||| |||||||||||||||||||||| | | |  |     
T  32115762 ccaccaccatcgtcccaccccctattctccatctcctgcaccgttacccatttattaaccgccaaataaaaaaggcgaggaaattgcacccgaagaggcg 32115663  T
Q  210 caccccccacccaattatttgactaaaaatatgtgctacctttgccaccgactacccttcgcaaattatctttgaaccagctcccctcccactcacccac 309  Q
    |||||||||||||||||| |||| |||||  ||||||||||   ||| | || ||||| |||| | ||||||  |||||||||||||||||| | |||||    
T  32115662 caccccccacccaattatctgaccaaaaaattgtgctacctcctccatcaacaaccctgcgcaca-tatcttcaaaccagctcccctcccacacccccac 32115564  T
Q  310 actgcggggaatactagaaatcatcctccaccacaaagagctatctctcccaccccccttcaaccgcctcccttc 384  Q
    |  |||| |||| ||||| ||||||| |||||||||||||| ||| | ||||||| |||||||||||| ||||||    
T  32115563 atcgcggcgaatgctagagatcatccgccaccacaaagagccatcacacccaccctccttcaaccgccccccttc 32115489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 124 - 378
Target Start/End: Original strand, 10235682 - 10235936
Alignment:
Q  124 ccaccccctactctccatctgacgcactgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaattgcacctgcaaaaacacaccccccacccaa 223  Q
    ||||||| ||||||||||||   |||||||||| ||||||| ||||||||||||||| ||| |||||||||||||| | |||  ||||||||||| ||||    
T  10235682 ccaccccttactctccatctcctgcactgtcacccatttattaaccgccaaatcaaagaggtgaggaaattgcacccgtaaaggcacaccccccaaccaa 10235781  T
Q  224 ttatttgactaaaaatatgtgctacctttgccaccgactacccttcgcaaattatctttgaaccagctcccctcccactcacccacactgcggggaatac 323  Q
    |||| |||| ||||  |||||||||||   ||||| || ||||| | || || |||||  ||||| |||||||| ||| | || ||||  ||| ||||||    
T  10235782 ttatctgaccaaaagaatgtgctacctcctccacctacaaccctacacacatgatcttcaaaccaactcccctctcacaccccaacaccacggcgaatac 10235881  T
Q  324 tagaaatcatcctccaccacaaagagctatctctcccaccccccttcaaccgcct 378  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||| |||||    
T  10235882 tagaaatcatccgccaccacaaagagctatctctcccaccctccttcaaacgcct 10235936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 10235602 - 10235671
Alignment:
Q  10 aagaatatggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccac 79  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||  ||||| | |||||||||||||    
T  10235602 aagaatatgttcctgcaaaacaacattatgcaacagagatgcacactccgacactgtctcctcctcccac 10235671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 15 - 369
Target Start/End: Complemental strand, 249082 - 248728
Alignment:
Q  15 tatggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcaccacc 114  Q
    |||||||||||||||||||||| ||||||| |||||||||||  ||||||| |||||||||||||||||| || ||||||||||||||||||||||| ||    
T  249082 tatggtcctgcaaaacaacattatgcaacaaagatgcacactcagacaccgtctcctcctcccacgccaagagacgtctcctccactcccaagcacctcc 248983  T
Q  115 acgatcgatccaccccctactctccatctgacgcactgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaattgcacctgcaaaaacacaccc 214  Q
    || |||   ||| |||||||||||||||||  |||| || || ||||||||||| |||||||||||||||||||| ||||  |||   ||  ||||| ||    
T  248982 accatccgcccatcccctactctccatctgctgcaccgttacccatttatcaactgccaaatcaaaaaggcgagggaatttaacccataatgacacatcc 248883  T
Q  215 cccacccaattatttgactaaaaatatgtgctacctttgccaccgactacccttcgcaaattatctttgaaccagctcccctcccactcacccacactgc 314  Q
    ||||||||||||| |||| ||||  ||||||||      ||||| || | ||| || | ||||||||  ||||| ||||||||||||   |||||||  |    
T  248882 cccacccaattatctgaccaaaagaatgtgctagaggctccacctacaatcctacgtacattatcttcaaaccaactcccctcccacaaccccacaccac 248783  T
Q  315 ggggaatactagaaatcatcctccaccacaaagagctatctctcccacccccctt 369  Q
       | |||||||||||||||| ||||||| |||| || |||||||||||| ||||    
T  248782 aacggatactagaaatcatccgccaccacgaagaactctctctcccaccctcctt 248728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 33856733 - 33856970
Alignment:
Q  13 aatatggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcacca 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||  ||||| | ||| |||||||| ||||| || || ||||||||| |||| ||||||    
T  33856733 aatatggtcctgcaaaacaacattatgcaacagagatgcacactcagacactgtctcttcctcccatgccaagagacgcctcctccacgcccaggcacca 33856832  T
Q  113 ccacgatcgatccaccccctactctccatctgacgcactgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaattgcacctgcaaaaacacac 212  Q
    |||| ||||  ||||||||||| |||||||||  |||  ||||| |||||||||||||||||||||||||||||||||||| ||||| | | |  ||| |    
T  33856833 ccaccatcggcccaccccctaccctccatctgctgcatcgtcacccatttatcaaccgccaaatcaaaaaggcgaggaaatcgcacccgtagaggcacgc 33856932  T
Q  213 cccccacccaattatttgactaaaaatatgtgctacct 250  Q
    ||||||||||| |||  ||| ||||| |||||||||||    
T  33856933 cccccacccaagtatcagaccaaaaaaatgtgctacct 33856970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 369
Target Start/End: Original strand, 41737228 - 41737583
Alignment:
Q  13 aatatggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcacca 112  Q
    |||||||||||||||||||||||| ||||||| |||||||||||  ||||| | |||||||||||||| ||| || |||||||||||| ||||||| ||     
T  41737228 aatatggtcctgcaaaacaacattatgcaacaaagatgcacactcagacactgtctcctcctcccacgtcaagagacgtctcctccacccccaagctcct 41737327  T
Q  113 ccacgatcgatccaccccctactctccatctgacgcactgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaattgcacctgcaaaaacacac 212  Q
    |||| ||    ||| ||||||||||| |||||  |||| || || ||||||||||||||||||||||||||| || | ||||  ||| | |||  ||||     
T  41737328 ccaccatttgcccatcccctactctctatctgctgcaccgttacccatttatcaaccgccaaatcaaaaaggtgatggaattttacccgtaaaggcacat 41737427  T
Q  213 cccccacccaattatttgactaaaaatatgtgctacctttgccaccgactacccttcgcaaattatctttgaaccagctcccctcccactcacccacact 312  Q
    || |||||||||||| |||| ||||| |||||||| ||   ||||| || ||||| |||| ||||||||  ||||| ||||| ||||||   || ||||     
T  41737428 cctccacccaattatctgaccaaaaaaatgtgcta-ctcctccacctacaaccctacgcacattatcttcaaaccaactcccttcccacaaccctacacc 41737526  T
Q  313 gcggggaatactagaaatcatcctccaccacaaagagctatctctcccacccccctt 369  Q
     ||  |||| |||| |||||||| |||||||||||||||||||||||||||| ||||    
T  41737527 acgacgaatgctagtaatcatccgccaccacaaagagctatctctcccaccctcctt 41737583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 11306743 - 11306917
Alignment:
Q  19 gtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcaccaccacga 118  Q
    |||||||||||||||||| ||||| |||||||||||||  |||||| ||||||||||||||||||| || ||||||||||||||||||||||| |||| |    
T  11306743 gtcctgcaaaacaacattatgcaatagagatgcacactcagacaccaactcctcctcccacgccaagagacgtctcctccactcccaagcacctccacca 11306842  T
Q  119 tcgatccaccccctactctccatctgacgcactgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaatt 194  Q
    ||   ||| |||||||||||||| ||   ||| || || |||||||||| ||||||||||||||||||||| ||||    
T  11306843 tccgcccatcccctactctccat-tgctccaccgttacccatttatcaatcgccaaatcaaaaaggcgagggaatt 11306917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 377
Target Start/End: Original strand, 33403339 - 33403706
Alignment:
Q  10 aagaatatggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagca 109  Q
    |||||||||  |||||||||||||||| || || |||||  |||| | ||| ||| |||||||||||||   ||| || || ||||||||| |||||||     
T  33403339 aagaatatgagcctgcaaaacaacattatgtaatagagacacacattcggataccaactcctcctcccaattcaacagacgcctcctccacacccaagct 33403438  T
Q  110 ccaccacgatcgatccaccccctactctccatctgacgcactgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaattgcacctgcaaaaaca 209  Q
    ||||| |  || | | |||| || ||||||||||   |||| ||||| ||||| |||||| | | ||||||||||||||||||||||||||| |    ||    
T  33403439 ccaccgccctcaacctaccctctcctctccatctcctgcaccgtcacccatttgtcaaccactagatcaaaaaggcgaggaaattgcacctgaagtggca 33403538  T
Q  210 caccccccacccaattat-ttgactaaaaatatgtgctacctttgccaccgactacccttcgcaaattatctttgaaccagctcccctcccactcaccca 308  Q
    || |||||| |||||||| |   | ||||| ||||| ||||    ||||| ||  |||| |||| ||||||||  ||||| | ||||||| ||   ||||    
T  33403539 ca-cccccatccaattatctatccaaaaaaaatgtgataccacctccaccaaccgccctacgcacattatcttcaaaccatcccccctccaacaacccca 33403637  T
Q  309 cactgcggggaatactagaaatcatcctccaccacaaagagctatctctcccaccccccttcaaccgcc 377  Q
    | |||||| |||| |||||| |||||| || |||| |||| ||||||||||||||| |||||| |||||    
T  33403638 ctctgcggcgaatgctagaagtcatccgccgccacgaagaactatctctcccaccctccttcagccgcc 33403706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 30828502 - 30828422
Alignment:
Q  20 tcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccac 100  Q
    ||||||||||||||||| ||||| | ||||||||||| |||||||| |||||||||||| || || ||||| |||| ||||    
T  30828502 tcctgcaaaacaacattatgcaataaagatgcacactcggacaccgtctcctcctcccaagcgaagaggcgcctccgccac 30828422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 463307 - 463128
Alignment:
Q  20 tcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcaccaccacgat 119  Q
    ||||||||||||||||| ||||    ||||||||| | |||||||| ||| |||||| | |||||| |||| |||||||||  ||| ||||| |||| |     
T  463307 tcctgcaaaacaacattatgcagttaagatgcacattcggacaccgtctcttcctcctaagccaaacggcgcctcctccacatccaggcacctccaccaa 463208  T
Q  120 cgatccaccccctactctccatctgacgcactgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaattgcacc 199  Q
    |   ||| || || |||||||| |  |||||||| || ||||| |   |||| ||||||||||||||||| |||||||||    
T  463207 cttcccagccactcctctccatatcccgcactgttacccatttgttttccgctaaatcaaaaaggcgagggaattgcacc 463128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 22758081 - 22758128
Alignment:
Q  10 aagaatatggtcctgcaaaacaacattctgcaacagagatgcacactg 57  Q
    |||||||||||||||||||||||||||  |||||||||| ||| ||||    
T  22758081 aagaatatggtcctgcaaaacaacattacgcaacagagacgcagactg 22758128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 16986028 - 16985988
Alignment:
Q  68 tcctcctcccacgccaaaaggcgtctcctccactcccaagc 108  Q
    |||||||||||||| ||||||||||| |||||| |||||||    
T  16986028 tcctcctcccacgctaaaaggcgtcttctccacacccaagc 16985988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 5594 - 5826
Alignment:
Q  17 tggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcaccaccac 116  Q
    |||||||||||||||||||| | ||||||||||||||||| |||||||| |||||||| ||||||||| || ||||||||||||||||| ||||| ||||    
T  5594 tggtcctgcaaaacaacattatacaacagagatgcacactcggacaccgtctcctcctgccacgccaagagacgtctcctccactcccaggcacctccac 5693  T
Q  117 gatcgatccaccccctactctccatctgacgcactgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaattgcacctgcaaaaacacaccccc 216  Q
     | ||  ||||||||  |||||||||||  ||||  |||| |||||||||||||||||||||||||||||||| ||||  ||| |||||  |||  ||||    
T  5694 caacggcccaccccc-cctctccatctgctgcaccatcacccatttatcaaccgccaaatcaaaaaggcgagggaattttacccgcaaaggcacttcccc 5792  T
Q  217 cacccaattatttgactaaaaatatgtgctacct 250  Q
    ||||||||||| |  | ||||| |||||||||||    
T  5793 cacccaattatctatccaaaaaaatgtgctacct 5826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 37716238 - 37716001
Alignment:
Q  12 gaatatggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcacc 111  Q
    |||||||| |||||||||||||||| ||||| |||||  |||||| ||| ||| ||||||||||||||||||  |  || ||||||||| ||||||||||    
T  37716238 gaatatgggcctgcaaaacaacattgtgcaatagagacacacactcggataccaactcctcctcccacgccagcaaacgcctcctccacacccaagcacc 37716139  T
Q  112 accacgatcgatccaccccctactctccatctgacgcactgtcactcatttatcaaccgccaaatcaaaaaggcgaggaaattgcacctgcaaaaacaca 211  Q
    ||| |  || | | |||| || ||||||||||   ||||||| || | ||| |||||  | |||||||| ||||||| || ||||||||| ||   ||||    
T  37716138 accgccctcaaccgaccctctcctctccatctcctgcactgttacccttttgtcaacaactaaatcaaagaggcgagaaagttgcacctgaaatggcaca 37716039  T
Q  212 ccccccacccaattatttgactaaaaatatgtgctacc 249  Q
    |||||||||||||||| | || |||||  |||||||||    
T  37716038 ccccccacccaattatctaaccaaaaaagtgtgctacc 37716001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 12045598 - 12045436
Alignment:
Q  65 gactcctcctcccacgccaaaaggcgtctcctccactcccaagcaccaccacgatcgatccaccccctactctccatctgacgcactgtcactcatttat 164  Q
    |||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||| | ||| || |||||||||||||    ||||||||| || || |    
T  12045598 gactcctcctcccaagccaaaaggcgcctcctccactcccaggcaccaccaccatccacccatcctctactctccatctctttcactgtcacccacttgt 12045499  T
Q  165 caaccgccaaatcaaaaaggcgaggaaattgcacctgcaaaaacacaccccccacccaattat 227  Q
     ||| || |||||||| | |||||| |||||||||   ||| |||| || |||||||||||||    
T  12045498 taacggctaaatcaaataagcgagggaattgcacccttaaagacactcctcccacccaattat 12045436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 374
Target Start/End: Complemental strand, 17540643 - 17540449
Alignment:
Q  179 aaaaggcgaggaaattgcacctgcaaaaacacaccccccacccaattatttgactaaaaatatgtgctacctttgccaccgactacccttcgcaaattat 278  Q
    ||||||||||||||||||| ||| |||  ||||||||| ||||| |||| |  ||||||||||||| ||||    |||| ||| | ||| | || |||||    
T  17540643 aaaaggcgaggaaattgcaactgtaaaggcacaccccc-acccatttatctatctaaaaatatgtgttaccacctccactgaccagcctacacacattat 17540545  T
Q  279 ctttgaaccagctcccctcccactcacccacactgcggggaatactagaaatcatcctccaccacaaagagctatctctcccaccccccttcaacc 374  Q
    |||  ||||| |||||||||  |   ||||||| |||  |||| ||||||| ||||| ||| |||||||| ||||||||||||||| |||||||||    
T  17540544 cttcaaaccaactcccctccaccaaccccacaccgcgacgaatgctagaaaccatccgccatcacaaagaactatctctcccaccctccttcaacc 17540449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 33799878 - 33800005
Alignment:
Q  12 gaatatggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcacc 111  Q
    |||||| ||||| ||||||||||||  |||||||||| ||||||| ||| |||| | ||||||||||||  || || ||  |||||||    ||||||||    
T  33799878 gaatatagtcctacaaaacaacattacgcaacagagacgcacactcggaaaccgtcacctcctcccacgttaagagacgcatcctcca----caagcacc 33799973  T
Q  112 accacgatcgatccaccccctactctccatct 143  Q
    ||||| ||| |||||| |||| ||||||||||    
T  33799974 accaccatctatccactccctcctctccatct 33800005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 4693446 - 4693404
Alignment:
Q  66 actcctcctcccacgccaaaaggcgtctcctccactcccaagc 108  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||    
T  4693446 actcctcttcccacgccaaaagacgtctccgccactcccaagc 4693404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 50817849 - 50817783
Alignment:
Q  20 tcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaa 86  Q
    ||||||||||||||||| ||||| | ||||  ||||| |||||||| ||| |||||||| |||||||    
T  50817849 tcctgcaaaacaacattatgcaataaagataaacactcggacaccgtctcttcctcccaagccaaaa 50817783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 53100903 - 53100823
Alignment:
Q  20 tcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccac 100  Q
    ||||||||||||||||| ||||| | ||||||||||| |||||||| ||| |||||||| ||||||||||| |||||||||    
T  53100903 tcctgcaaaacaacattatgcaataaagatgcacactcggacaccgtctcttcctcccaagccaaaaggcgcctcctccac 53100823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 23647410 - 23647484
Alignment:
Q  10 aagaatatggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaa 84  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||||  ||||| | ||||||||||||||||||    
T  23647410 aagaatatgatcctgcaaaacaacattatgcaacatagatgcacacttcgacactgtctcctcctcccacgccaa 23647484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 23811163 - 23811089
Alignment:
Q  10 aagaatatggtcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaa 84  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||||  ||||| | ||||||||||||||||||    
T  23811163 aagaatatgatcctgcaaaacaacattatgcaacatagatgcacacttcgacactgtctcctcctcccacgccaa 23811089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 4636908 - 4636863
Alignment:
Q  66 actcctcctcccacgccaaaaggcgtctcctccactcccaagcacc 111  Q
    ||||||||||||| || |||||||| ||||||||| ||||||||||    
T  4636908 actcctcctcccaggcaaaaaggcgcctcctccacacccaagcacc 4636863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 373
Target Start/End: Complemental strand, 12464051 - 12463935
Alignment:
Q  257 ccgactacccttcgcaaattatctttgaaccagctcccctcccactcacccacactgcggggaatactagaaatcatcctccaccacaaagagctatctc 356  Q
    ||||| ||||| |||| ||||||||  ||||| ||||||||| ||   ||||| | ||||   || ||||| ||||||| |||||||||||||||||| |    
T  12464051 ccgacaaccctacgcacattatcttcaaaccaactcccctccgacatccccactccgcggcagatgctagagatcatccgccaccacaaagagctatccc 12463952  T
Q  357 tcccaccccccttcaac 373  Q
    |||||||| ||||||||    
T  12463951 tcccaccctccttcaac 12463935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 13850974 - 13850930
Alignment:
Q  12 gaatatggtcctgcaaaacaacattctgcaacagagatgcacact 56  Q
    |||||||||| |||||||||||||| |||||||||||||||||||    
T  13850974 gaatatggtcatgcaaaacaacattatgcaacagagatgcacact 13850930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 5846858 - 5846951
Alignment:
Q  23 tgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcaccaccac 116  Q
    ||||||||||| || ||||| | ||||||||||| ||| ||  |||||||||||||  |||| ||||| |||||||||  ||| ||||||||||    
T  5846858 tgcaaaacaacgttatgcaagaaagatgcacactcggaaacaaactcctcctcccaaaccaagaggcgcctcctccacatccaggcaccaccac 5846951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 12464284 - 12464165
Alignment:
Q  20 tcctgcaaaacaacattctgcaacagagatgcacactgggacaccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcaccaccacgat 119  Q
    ||||||| ||||||||| ||||| ||| | ||||| | ||  || |||||||| ||||||||||| || || ||||||||| |||| ||||| || |  |    
T  12464284 tcctgcagaacaacattatgcaatagaaacgcacattcggtaactgactcctcttcccacgccaacagacgcctcctccacacccaggcaccgcccc--t 12464187  T
Q  120 cgatccaccccctactctccat 141  Q
    | ||||| ||||||||||||||    
T  12464186 ccatccaacccctactctccat 12464165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 31599969 - 31600007
Alignment:
Q  18 ggtcctgcaaaacaacattctgcaacagagatgcacact 56  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  31599969 ggtcttgcaaaacaacattatgcaacagagatgcacact 31600007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 12092123 - 12092070
Alignment:
Q  61 caccgactcctcctcccacgccaaaaggcgtctcctccactcccaagcaccacc 114  Q
    |||| ||||||||||||||||||| || |||||||||||   ||||||||||||    
T  12092123 caccaactcctcctcccacgccaacagtcgtctcctccaactccaagcaccacc 12092070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 15184557 - 15184618
Alignment:
Q  82 caaaaggcgtctcctccactcccaagcaccaccacgatcgatccaccccctactctccatct 143  Q
    ||||||||| ||||||||||||||||||||||| ||||| | |||||| || || |||||||    
T  15184557 caaaaggcgcctcctccactcccaagcaccacctcgatccacccaccctctgctttccatct 15184618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 25740766 - 25740808
Alignment:
Q  66 actcctcctcccacgccaaaaggcgtctcctccactcccaagc 108  Q
    ||||||||||||| || |||||||| |||||||||||||||||    
T  25740766 actcctcctcccatgctaaaaggcgcctcctccactcccaagc 25740808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 15160970 - 15161031
Alignment:
Q  82 caaaaggcgtctcctccactcccaagcaccaccacgatcgatccaccccctactctccatct 143  Q
    ||||||||| |||||||||||||||||||||||  |||| | |||||| || || |||||||    
T  15160970 caaaaggcgcctcctccactcccaagcaccacctagatccacccaccctctcctttccatct 15161031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 15170979 - 15171040
Alignment:
Q  82 caaaaggcgtctcctccactcccaagcaccaccacgatcgatccaccccctactctccatct 143  Q
    ||||||||| |||||||||||||||||||||||  |||| | |||||| || || |||||||    
T  15170979 caaaaggcgcctcctccactcccaagcaccacctagatccacccaccctctcctttccatct 15171040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 15179751 - 15179812
Alignment:
Q  82 caaaaggcgtctcctccactcccaagcaccaccacgatcgatccaccccctactctccatct 143  Q
    ||||||||| |||||||||||||||||||||||  |||| | |||||| || || |||||||    
T  15179751 caaaaggcgcctcctccactcccaagcaccacctagatccacccaccctctcctttccatct 15179812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1243 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1243
Description:

Target: scaffold1243; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 1311 - 1250
Alignment:
Q  82 caaaaggcgtctcctccactcccaagcaccaccacgatcgatccaccccctactctccatct 143  Q
    |||||||||  |||||||||||||||||||||| ||||| | |||||| || || |||||||    
T  1311 caaaaggcgcttcctccactcccaagcaccacctcgatccacccaccctctgctttccatct 1250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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