View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_high_43 (Length: 357)

Name: NF6314_high_43
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_high_43
NF6314_high_43
[»] chr3 (2 HSPs)
chr3 (1-340)||(51276854-51277194)
chr3 (169-199)||(51131896-51131926)
[»] chr4 (1 HSPs)
chr4 (153-200)||(51954182-51954229)
[»] chr7 (5 HSPs)
chr7 (153-191)||(12425043-12425081)
chr7 (165-200)||(48125136-48125171)
chr7 (153-199)||(5273552-5273598)
chr7 (157-199)||(41519072-41519114)
chr7 (167-199)||(12877223-12877255)
[»] chr6 (1 HSPs)
chr6 (157-195)||(20864173-20864211)
[»] chr1 (3 HSPs)
chr1 (169-200)||(38939285-38939316)
chr1 (152-200)||(36428779-36428827)
chr1 (164-200)||(40257478-40257514)
[»] chr8 (1 HSPs)
chr8 (157-195)||(35475542-35475580)
[»] chr2 (1 HSPs)
chr2 (157-199)||(32106638-32106680)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 51276854 - 51277194
Alignment:
Q  1 caaaggcaacgaaacatcatttgcaatctccatttgtcagtgacagatttgatttcttgtctatatgacttcaactaaaaaacatgacattgtcacctcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51276854 caaaggcaacgaaacatcatttgcaatctccatttgtcagtgacagatttgatttcttttctatatgacttcaactaaaaaacatgacattgtcacctcg 51276953  T
Q  101 caagagacgaaaacaaactgctgttgtttataattagtggactctaaggtctgtttgattatctccggtgtcaatttcggtgggctagtttggcttcttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  51276954 caagagacgaaaacaaactgctgttgtttataattagtggactctaaggtctgtttgattatctccggtgtcaatttcggtgggctagtttggctt-ttc 51277052  T
Q  201 ----nnnnnnnnntagtggactcctcttaattttgtgtaacactacacaagaaaatttatgttttccgatcttaaaacatgatgacagtatcatttctta 296  Q
                 ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51277053 aaaaaaaaaaaaatagtggactcctcttaattttgtgtaacactacaca--aaaatttatgttttccgatcttaaaacatgacgacagtatcatttctta 51277150  T
Q  297 agaaaatagagataatccaaatgtgtaaacaatcatgttattct 340  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  51277151 agaaaacagagataatccaaatgtgtaaacaatcatgttattct 51277194  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 199
Target Start/End: Original strand, 51131896 - 51131926
Alignment:
Q  169 tgtcaatttcggtgggctagtttggcttctt 199  Q
    |||||||||||||||||||||||||||||||    
T  51131896 tgtcaatttcggtgggctagtttggcttctt 51131926  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 51954182 - 51954229
Alignment:
Q  153 gtttgattatctccggtgtcaatttcggtgggctagtttggcttcttc 200  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  51954182 gtttgattatctccggtgtcaatttgggtgggctaatttagcttcttc 51954229  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 12425043 - 12425081
Alignment:
Q  153 gtttgattatctccggtgtcaatttcggtgggctagttt 191  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  12425043 gtttgattatctccggtgtcaatttcggtggactagttt 12425081  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 200
Target Start/End: Complemental strand, 48125171 - 48125136
Alignment:
Q  165 ccggtgtcaatttcggtgggctagtttggcttcttc 200  Q
    |||||| |||||||||||||||||||||||||||||    
T  48125171 ccggtgccaatttcggtgggctagtttggcttcttc 48125136  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 5273598 - 5273552
Alignment:
Q  153 gtttgattatctccggtgtcaatttcggtgggctagtttggcttctt 199  Q
    |||||||| ||||||||| |||||| ||||||||||||| |||||||    
T  5273598 gtttgattgtctccggtgccaatttgggtgggctagtttagcttctt 5273552  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 41519114 - 41519072
Alignment:
Q  157 gattatctccggtgtcaatttcggtgggctagtttggcttctt 199  Q
    ||||||||||||||||||||| ||||||||| ||| |||||||    
T  41519114 gattatctccggtgtcaatttgggtgggctaatttagcttctt 41519072  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 12877223 - 12877255
Alignment:
Q  167 ggtgtcaatttcggtgggctagtttggcttctt 199  Q
    |||| ||||||||||||||||||||||||||||    
T  12877223 ggtgccaatttcggtgggctagtttggcttctt 12877255  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 20864211 - 20864173
Alignment:
Q  157 gattatctccggtgtcaatttcggtgggctagtttggct 195  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  20864211 gattatctccggtgtcaatttcagtgggctagtttggct 20864173  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 200
Target Start/End: Original strand, 38939285 - 38939316
Alignment:
Q  169 tgtcaatttcggtgggctagtttggcttcttc 200  Q
    ||||||||||||||||||||||||||||||||    
T  38939285 tgtcaatttcggtgggctagtttggcttcttc 38939316  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 36428779 - 36428827
Alignment:
Q  152 tgtttgattatctccggtgtcaatttcggtgggctagtttggcttcttc 200  Q
    ||||||||| || |||||| |||||| ||||||||||||| ||||||||    
T  36428779 tgtttgattctccccggtgccaatttgggtgggctagttttgcttcttc 36428827  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 40257478 - 40257514
Alignment:
Q  164 tccggtgtcaatttcggtgggctagtttggcttcttc 200  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  40257478 tccggtgtcaatttgggtgggctagtttagcttcttc 40257514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 35475580 - 35475542
Alignment:
Q  157 gattatctccggtgtcaatttcggtgggctagtttggct 195  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  35475580 gattatccccggtgccaatttcggtgggctagtttggct 35475542  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 32106638 - 32106680
Alignment:
Q  157 gattatctccggtgtcaatttcggtgggctagtttggcttctt 199  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||    
T  32106638 gattctctccggtgccaatttcagtgggctagtttggcttctt 32106680  T

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