View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_50 (Length: 327)
Name: NF6314_high_50
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 3 - 311
Target Start/End: Original strand, 8415427 - 8415735
Alignment:
| Q |
3 |
gaagcaggaaactgaaccacaaaaatagagaccaaacaattctctggtaaaacttacaactgagttattgagagagtaacttgtaggagtcactccctca |
102 |
Q |
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| T |
8415427 |
gaagcaggaaactgaaccacaaaaatagagaccaaacaattctctgataaaacttacaactgagttattgagagagtaacttgtaggagtcactccctca |
8415526 |
T |
|
| Q |
103 |
atagagacaacaaaatgagatgtgagaacttgtcaaaagagagatatcccacaaattccctaatctttgtttaatctcaaatttatagtacacctccctt |
202 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8415527 |
atagagaccacaaaatgagatgtgagaacttgtaaaaagagaagtatcccacaaattccctaatctttgtttaatctcaaatttgtagtacacctccctt |
8415626 |
T |
|
| Q |
203 |
ttcataagttctcaaccccaaaattcgataaaactgtgtactacagaatgaacaaaattgaaggacatatcctgattttatagctaagcttactcactat |
302 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8415627 |
ttcataagttctctaccccaaaattcgataaaactgtgtactactgtatgaacaaaactgaaggacatgtcctgattttatagctaagcttactcactat |
8415726 |
T |
|
| Q |
303 |
atttcataa |
311 |
Q |
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||||||||| |
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| T |
8415727 |
atttcataa |
8415735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 8362219 - 8362253
Alignment:
| Q |
274 |
ctgattttatagctaagcttactcactatatttca |
308 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
8362219 |
ctgattttatagctaagcttactcactatatttca |
8362253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 8406042 - 8406142
Alignment:
| Q |
4 |
aagcaggaaactgaaccacaaaaatagagaccaaacaattctct--ggtaaaacttacaactgagttattgagagagtaacttgtaggagtcactccctc |
101 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||| | |||||| | |||| |||||||||||||| || || ||| ||| || ||||||||||||| |
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| T |
8406042 |
aagcacgaaactgaaccacaaaaat-gagaccaaaaacttctctaggataaatcttacaactgagtttttaggaaagtgactcataagagtcactccctc |
8406140 |
T |
|
| Q |
102 |
aa |
103 |
Q |
| |
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|| |
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|
| T |
8406141 |
aa |
8406142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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