View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_52 (Length: 325)
Name: NF6314_high_52
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 48472484 - 48472197
Alignment:
| Q |
17 |
aatatgttgcagttgcagcaaagtgagtgaattgatagttgagacagtaacgttgtgatacnnnnnnnnnnnnnnnncataggagattgatccaaaaata |
116 |
Q |
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| T |
48472484 |
aatatgttgcagttgcagcaaagtgagtgaattgatagttgagacagtaacgttgtgatacaaaaaaaaaaaa----cataggagattgatccaaaaata |
48472389 |
T |
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| Q |
117 |
acttcatctaacagtcataacgaaacnnnnnnnnctacagaacaacaaccttcatccgcaattcgagcaagtgaaatattgacattagcattttgatgta |
216 |
Q |
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| T |
48472388 |
acttcatctaacagtcataacgaaacaaaaaaaactacagaacaacaaccttcatccgcaattcgagcaagtgaaatattgacattagcattttgatgta |
48472289 |
T |
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| Q |
217 |
tcaaattacttggaatgtaattaaatttaggaagatcctcacttccagtttcatcaaataatgagatttcaacattttatgaaccttttgtt |
308 |
Q |
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| T |
48472288 |
tcaaattacttggaatgtaattaaatttaggaagatcctcacttccagtttcatcaaataatgagatttcaacattttatgaaccttttgtt |
48472197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 307
Target Start/End: Original strand, 35687416 - 35687555
Alignment:
| Q |
168 |
tcatccgcaattcgagcaagtgaaatattgacattagcattttgatgtatcaaattacttggaatgtaattaaatttaggaagatcctcacttccagttt |
267 |
Q |
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||||||||||| ||||||||||||||||| ||||| ||| |||||| | |||| |||||||||||||||||| |||| ||||||||| |||| |
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| T |
35687416 |
tcatccgcaatccgagcaagtgaaatattaacatttgcactttgatacagtgtgttacatggaatgtaattaaattttggaaaatcctcactgttggttt |
35687515 |
T |
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| Q |
268 |
catcaaataatgagatttcaacattttatgaaccttttgt |
307 |
Q |
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| T |
35687516 |
catctaataatgatattttaatgttttcagaaccttttgt |
35687555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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