View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_59 (Length: 299)
Name: NF6314_high_59
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_59 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 39091200 - 39090915
Alignment:
| Q |
14 |
caaaggcaaaacagtatttcaacaaaaatcatcactttggataaaatgtattaacaaaaatgtatccctacccgtataaaatttctccaagcccttaagc |
113 |
Q |
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| T |
39091200 |
caaaggcaaaacagtatttcaacaaaaatcatcactttggataaaatgtattaacaaaaatgtatccctacccgtataaaatttctccaagcccttaagc |
39091101 |
T |
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| Q |
114 |
tgtgcaggcgttttgagctttcttttcggaaacttctccgcggagactttattttcttctggttgcaactcacttgattctaaacaccaaccgagaagca |
213 |
Q |
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| T |
39091100 |
tgtgcaggcgttttgagctttcttttcggaaacttctccgcggagactttattttcttctggttgcaactcacttgattctaaacaccaaccgagaagca |
39091001 |
T |
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| Q |
214 |
agaagtttagttcatgcattagaatgaaaaaataaataacaacatacaataagatatacaacaatcacaggaaacatcttgtgcta |
299 |
Q |
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| T |
39091000 |
agaagtttagtttgtgcattagaatgaaaaaataaataacaacatacaataagatatacaacaatcacaggaaacatcttgtgcta |
39090915 |
T |
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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 24728410 - 24728293
Alignment:
| Q |
114 |
tgtgcaggcgttttgagctttcttttcggaaacttctccgcggagactttattttcttctggttgcaactcacttgattctaaacaccaaccgagaagca |
213 |
Q |
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| T |
24728410 |
tgtgcaggtgttttgagctttcttttctgatttttctctgttgagtctttatttttttctagttgcaactcactcgattccaaacaccaagcgagaagta |
24728311 |
T |
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| Q |
214 |
agaagtttagttcatgca |
231 |
Q |
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| T |
24728310 |
caaagtttagttcatgca |
24728293 |
T |
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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 20423013 - 20422919
Alignment:
| Q |
187 |
ttgattctaaacaccaaccgagaagcaagaa-gtttagttcatgcattagaatgaaaaaataaataacaacatacaataagatatacaacaatca |
280 |
Q |
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| T |
20423013 |
ttgattctaaacaccaagcaagaaaaaaaaaagtttagttcatgcattagaatgaaaaaattatttacataatacaataagatatacaacaatca |
20422919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 280
Target Start/End: Original strand, 9883180 - 9883273
Alignment:
| Q |
187 |
ttgattctaaacaccaaccgagaagcaagaagtttagttcatgcattagaatgaaaaaataaataacaacatacaataagatatacaacaatca |
280 |
Q |
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| T |
9883180 |
ttgattccaaacaccaagcaagaaacagaaagtttagttcatgcattagaatgaaaaaatgatttacataatacaataagatatacaccaatca |
9883273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 4652033 - 4652092
Alignment:
| Q |
187 |
ttgattctaaacaccaaccgagaagcaagaagtttagttcatgcattagaatgaaaaaat |
246 |
Q |
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| T |
4652033 |
ttgattctaaacaccaagcgagaaatatgaagtttagtacatgccttagaatgaaaaaat |
4652092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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