View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6314_high_62 (Length: 287)
Name: NF6314_high_62
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_62 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 26576774 - 26577003
Alignment:
| Q |
19 |
atacttttatttcatcgagttgttactcatattacttctttgcatgattctaattttctctctaacattcaaatttcttgcacaggctgagaataaaaat |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26576774 |
atacttttatttcaacgagttgttactcatattacttctttgcatgattctaattttctctctaacattcaaatttcttgcacaggctgagaataaaaat |
26576873 |
T |
|
| Q |
119 |
ggcattgcagaattataaatgaactgcaataaataaagataacatgatttaaaaccatgtcgccttttgtggaaggggaggtgtgtctagcttgttgtag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
26576874 |
ggcattgcagaattataaatgaactgcaataaataaagatgacatggttt-------------------tggaaggggaggtgtgtctagcttgtggtag |
26576954 |
T |
|
| Q |
219 |
tttttgagttgtatctctatgctttagaaaatttgtatttgtttttagt |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26576955 |
tttttgagttgtatctctatgctttagaaaatttgtatttgtttttagt |
26577003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 26584679 - 26584826
Alignment:
| Q |
19 |
atacttttatttcatcgagttgttactcatattacttctttgcatgattctaattttctctctaacattcaaatttcttgcacaggctgagaataaaaat |
118 |
Q |
| |
|
|||||||||||||| |||||| || | |||||||||| ||||| ||||| |||||||||||||||| ||||||| |||||| ||||||||| | |
|
|
| T |
26584679 |
atacttttatttcaatgagttgatatttatattacttcattgcacatttctatttttctctctaacattaaaatttccatgtcaggcttagaataaaagt |
26584778 |
T |
|
| Q |
119 |
ggcattgcagaattataaatgaactgcaataaataaagataacatgat |
166 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26584779 |
gtcattgcagaattataaatgaactgcaataaataaagataacgtgat |
26584826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 26571255 - 26571343
Alignment:
| Q |
72 |
ttttctctctaacattcaaatttcttgcacaggctgagaataaaaatggcattgcagaattataaatgaactgcaataaataaagataa |
160 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26571255 |
ttttctctttaacattcaaatttcttggacaggtcgagaataaaaatatcattgcagaattataaatgaactgcaataaataatgataa |
26571343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 26584856 - 26584901
Alignment:
| Q |
220 |
ttttgagttgtatctctatgctttagaaaatttgtatttgttttta |
265 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
26584856 |
ttttgagttgtatctcactgctttagcaaatttgtatttgttttta |
26584901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University