View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_70 (Length: 259)
Name: NF6314_high_70
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 5534848 - 5535096
Alignment:
| Q |
1 |
caaatcgatcaacacatttcgcgacttcaatcaatcaacaatcttcaatcgacaattgcatctctgattgtgaaaatgttagggttcttctctccatcat |
100 |
Q |
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| T |
5534848 |
caaatcgatcaacacattttgcgacttcaatcaatcaacaatcttcaatcgacaattgcatctctgattgtgaaaatgttagggttcttctctccatcat |
5534947 |
T |
|
| Q |
101 |
caaatatcaacaaatcaataatcttcaattgatagttttcaatcgaccttaaattgattcaagtcctcaaatctctgattgtgaaaacctcaaatcagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5534948 |
caaatatcaacaaatcaataatcttcaattgatagttttcaatcgaccttaaattgattcaagtcctcaaatctctgattgtgaaaacctcaaatcagta |
5535047 |
T |
|
| Q |
201 |
atcacgattctatctcattacaacttccattttctctctctagtctctg |
249 |
Q |
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| T |
5535048 |
attacgattctatctcattacaacttccgttctctctctctagtctctg |
5535096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 12107937 - 12107836
Alignment:
| Q |
136 |
ttttcaatcgaccttaaattgattcaagtcctcaaatctctgattgtgaaaacctcaaatcagtaatcacgattctatctcattacaacttccattttct |
235 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| ||||||| | ||||| |||||||| ||||||| |||||| |
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| T |
12107937 |
ttttcaatcgatctcaaattgattcaagtcctcaaatctctgattgtgagaacctcaaattagtaatctcaattctctctcattataacttccgttttct |
12107838 |
T |
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| Q |
236 |
ct |
237 |
Q |
| |
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|| |
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| T |
12107837 |
ct |
12107836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 1527685 - 1527744
Alignment:
| Q |
146 |
accttaaattgattcaagtcct-caaatctctgattgtgaaaacctcaaatcagtaatcac |
205 |
Q |
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|||| |||||||||||||| || ||||| |||| ||||||||||||| ||||||||||||| |
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| T |
1527685 |
acctcaaattgattcaagttctacaaatttctggttgtgaaaacctc-aatcagtaatcac |
1527744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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