View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_71 (Length: 258)
Name: NF6314_high_71
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_71 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 48593216 - 48593454
Alignment:
| Q |
20 |
gaagggaatggaagattgtgtggttgatggtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgg |
119 |
Q |
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| T |
48593216 |
gaagggaatggaagattgtgtggttgatggtaacatgattctgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgg |
48593315 |
T |
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| Q |
120 |
gaaaacccattagagtttagaccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaagga |
219 |
Q |
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| T |
48593316 |
gaaaacccattagagtttaggccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaagga |
48593415 |
T |
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| Q |
220 |
gaggttgtcctggtatgcctttggccctacgtcaattac |
258 |
Q |
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| T |
48593416 |
gaggttgtcctggtatgcctttggccctacgtcaattac |
48593454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 48597827 - 48598065
Alignment:
| Q |
20 |
gaagggaatggaagattgtgtggttgatggtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgg |
119 |
Q |
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| T |
48597827 |
gaagggaatggaagattgtgtggttgatggtaacatgattctgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgg |
48597926 |
T |
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| Q |
120 |
gaaaacccattagagtttagaccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaagga |
219 |
Q |
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| T |
48597927 |
gaaaacccattagagtttaggccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaagga |
48598026 |
T |
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| Q |
220 |
gaggttgtcctggtatgcctttggccctacgtcaattac |
258 |
Q |
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| T |
48598027 |
gaggttgtcctggtatgcctttggccctacgtcaattac |
48598065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 245
Target Start/End: Complemental strand, 23231038 - 23230808
Alignment:
| Q |
24 |
ggaatggaagattgtgtggttgatggtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaa |
123 |
Q |
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| T |
23231038 |
ggaatggaagattgtgttgttgatggtaaaatggttccaaaaggatcaatggtttgtgtgaacatttgggctatgggaagagaccaaaagatatgggaaa |
23230939 |
T |
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| Q |
124 |
acccattagagtttagaccagaaaggtttttagaaaacaaag---------atattgacatgaaagggcaccagtttgagttgttgccatttggttctgg |
214 |
Q |
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| T |
23230938 |
atgcattagattttaagccagaaaggtttttagaaaacaaagaaggaaacaatatagatatgaaagggcatcactatgagttgctaccatttggttctgg |
23230839 |
T |
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| Q |
215 |
aaggagaggttgtcctggtatgcctttggcc |
245 |
Q |
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| T |
23230838 |
aaggagaggctgccctggtatgccgttggcc |
23230808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 245
Target Start/End: Complemental strand, 23223286 - 23223063
Alignment:
| Q |
31 |
aagattgtgtggttgatggtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccatt |
130 |
Q |
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| T |
23223286 |
aagattgtgtggtcgatgggaaaatgatcaaaaaaggctcaatagtttgtgtgaacatttgggctattggaagggactcaaagacttggaaaaacccact |
23223187 |
T |
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| Q |
131 |
agagtttagaccagaaaggtttttagaa-----aacaaa----gatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggaga |
221 |
Q |
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| T |
23223186 |
agagtttaggcctgaaaggtttttagaatctggaaaagagagtgagatagatatcaaagggcatgactttgagttgttgccatttggttctggaaggaga |
23223087 |
T |
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| Q |
222 |
ggttgtcctggtatgcctttggcc |
245 |
Q |
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| T |
23223086 |
ggttgcccggggatgcctttggcc |
23223063 |
T |
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