View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6314_high_73 (Length: 254)
Name: NF6314_high_73
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_73 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 17521824 - 17521571
Alignment:
| Q |
1 |
gctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaatagtgcaaatttgtatccacatattct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
17521824 |
gctcagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactct |
17521725 |
T |
|
| Q |
101 |
t--gagtttaacagcgagacttctctatatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgcattttatagtacttatggaacaaa |
198 |
Q |
| |
|
| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17521724 |
tttgagtttaacagcgagatttctctctatatcttcagatattgttttgccaaacaaaagcctctttgcaaggtgctttttatagtacttatggaacaaa |
17521625 |
T |
|
| Q |
199 |
tctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataatttcc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521624 |
tctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataatttcc |
17521571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 14812360 - 14812609
Alignment:
| Q |
5 |
agcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaatagtgcaaatttgtatccacatattctt--g |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| | |
|
|
| T |
14812360 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
14812459 |
T |
|
| Q |
103 |
agtttaacagcgagacttctctatatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctt |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14812460 |
agtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttggaaggtgctttttatagtacttatggaacaaatctt |
14812559 |
T |
|
| Q |
203 |
tatcatgcaacaatttgataaacatcaccaccttgtcaagaataatttcc |
252 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14812560 |
tatcatgcaacaatttgataaacatcatcaccttgtcaagaataatttcc |
14812609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 15259355 - 15259604
Alignment:
| Q |
5 |
agcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaatagtgcaaatttgtatccacatattctt--g |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| | |
|
|
| T |
15259355 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
15259454 |
T |
|
| Q |
103 |
agtttaacagcgagacttctctatatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctt |
202 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15259455 |
agtttaacagcgagatttctctctatatcttcagatattgtttttccaaacaaaagcctctttgtaaggtgctttttatagtacttatggaacaaatctt |
15259554 |
T |
|
| Q |
203 |
tatcatgcaacaatttgataaacatcaccaccttgtcaagaataatttcc |
252 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15259555 |
tatcatgcaacaatttgataaacatcatcaccttgtcaagaataatttcc |
15259604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14804936 - 14805009
Alignment:
| Q |
1 |
gctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaat |
74 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
14804936 |
gctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
14805009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15251930 - 15252003
Alignment:
| Q |
1 |
gctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaat |
74 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
15251930 |
gctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
15252003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University